View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_57 (Length: 252)
Name: NF9771_low_57
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 24722884 - 24723090
Alignment:
| Q |
35 |
gtgattaggaattgaatcattctcaaagctgggagattctatctattttgaagaagaagggaaacatcctagtctatacatcattcagtacatatcaagc |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24722884 |
gtgattaggaattgaatcattctcaaagctgggagattctatctattttgaagaagaagggaaacatcgtagtctatacatcattcagtacatatcaagc |
24722983 |
T |
|
| Q |
135 |
tcatttaattggaattctggaactgtcaatnnnnnnnntcataatcggaaatctggtcaacttttgctcactcagacagttgttccagcttcttcgtcgg |
234 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24722984 |
tcatttaattggaattctggaactgtcaataaaaaaaatcataatcggaaatctggtcaacttttgctcactcagacagttgttccagcttcttcgtcgg |
24723083 |
T |
|
| Q |
235 |
acccttt |
241 |
Q |
| |
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||||||| |
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| T |
24723084 |
acccttt |
24723090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 24731548 - 24731664
Alignment:
| Q |
38 |
attaggaattgaatcattctcaaagctgggagattctatctattttgaagaagaagggaaacatcctagtctatacatcattcagtacatatcaagctca |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
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| T |
24731548 |
attaggaattgaatcattctcaaagctgggagattctatatattttgaagaagaagggcataatcctagtctatacatcattcagtatatatcaagctca |
24731647 |
T |
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| Q |
138 |
tttaattggaattctgg |
154 |
Q |
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||||||||||| ||||| |
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| T |
24731648 |
tttaattggaaatctgg |
24731664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 24692111 - 24692227
Alignment:
| Q |
38 |
attaggaattgaatcattctcaaagctgggagattctatctattttgaagaagaagggaaacatcctagtctatacatcattcagtacatatcaagctca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
24692111 |
attaggaattgaatcattctcaaagctgggagattccatctattttgaagaggaagggaatagtcctagtctatacatcattcagtatatatcaagctca |
24692210 |
T |
|
| Q |
138 |
tttaattggaattctgg |
154 |
Q |
| |
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||||||||||| ||||| |
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| T |
24692211 |
tttaattggaaatctgg |
24692227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 24763792 - 24763905
Alignment:
| Q |
35 |
gtgattaggaattgaatcattctcaaagctgggagattctatctattttgaagaagaagggaaacatcctagtctatacatcattcagtacatatcaagc |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||| |||||||||||||||| ||||||||||||| |
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| T |
24763792 |
gtgattaggaattgaatcattctcaaagctgggaggttctatttattttgaagaaaaagggaataatcttagtctatacatcattaagtacatatcaagt |
24763891 |
T |
|
| Q |
135 |
tcatttaattggaa |
148 |
Q |
| |
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||| |||||||||| |
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| T |
24763892 |
tcacttaattggaa |
24763905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 24731650 - 24731714
Alignment:
| Q |
176 |
taatcggaaatctggtcaacttttgctcactcagacagttgttccagcttcttcgtcggaccctt |
240 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
24731650 |
taattggaaatctgggaaaattttgctcactcagacagttgttccggctgcttcatcggaccctt |
24731714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 24692235 - 24692277
Alignment:
| Q |
198 |
ttgctcactcagacagttgttccagcttcttcgtcggaccctt |
240 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
24692235 |
ttgctcacccagacagttgttccagcagcttcgtcggaccctt |
24692277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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