View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_58 (Length: 252)
Name: NF9771_low_58
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 15851891 - 15852117
Alignment:
| Q |
19 |
tacagaatcatggtaacctatggaaacaaaaaagtttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaatttt |
118 |
Q |
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| T |
15851891 |
tacagaatcatggtaacctatggaatcagaaaagattatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaatttt |
15851990 |
T |
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| Q |
119 |
caagtgaaattgtaaagggtgattatatatctctctttcgacaattgacatgatctcccctaatttccacaagttcacccctcc-ggggattcatggtcc |
217 |
Q |
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| T |
15851991 |
caagtgaaattgctaagggtgattatatatctctctttcgacaattgacatgatctcccctaatttccacaagttccccactccgggggattcatggtcc |
15852090 |
T |
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| Q |
218 |
tagcgggggttcataccaattcatctc |
244 |
Q |
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| T |
15852091 |
tagcgggggttcataccaattcatctc |
15852117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 15858840 - 15858983
Alignment:
| Q |
45 |
caaaaaagtttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattat |
144 |
Q |
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| T |
15858840 |
caaaaaggattatgtattaataatcatcaaaatgaaattgtgtgattaaaaatgatcttcttgtgtcaaattttcatgtgacattgttaagggtgattat |
15858939 |
T |
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| Q |
145 |
atatct--ctctttcgacaattgacatgatctcccctaatttcc |
186 |
Q |
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| T |
15858940 |
gtatctcgctcttttaacaattgaaatgatctaccctaatttcc |
15858983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 15844715 - 15844898
Alignment:
| Q |
54 |
ttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattatatatctctc |
153 |
Q |
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| T |
15844715 |
ttatgtattaataatcatcaaaatgaaactatgtgattaaaaattatcttcttgtgtccaattttcacgtgacatt-aataaggagattatgaatctctc |
15844813 |
T |
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| Q |
154 |
tttcgacaattgacatgatctcccctaatttccacaagttcacccctccggggattcatggtcctagcgggggttcataccaattcatct |
243 |
Q |
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| T |
15844814 |
tctcaataattgacatgatgt-ccctaatttccacaatttccaccctccagg----catggtcctagcggggattcatacgaattcatct |
15844898 |
T |
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