View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_6 (Length: 525)
Name: NF9771_low_6
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 1056388 - 1055887
Alignment:
| Q |
1 |
aaaggatattggaatgcctaaagaaaagatatgtggagatgcatcaaacatttctttgcaaagatatgaactatcgaataacaagttatgcagactcatg |
100 |
Q |
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| T |
1056388 |
aaaggatattggaatgcctaaagaaaagatatgtggagatgcatcaaacatttctttgcaaagatatgaactatcgaataacaagttatgcagactcatg |
1056289 |
T |
|
| Q |
101 |
tctaggccaattaggtgctctagtgagaattagataaaaatcatggcatgccttatgtcctaagatttggcatttctttgtcttaggagttgatatgctt |
200 |
Q |
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| T |
1056288 |
tctaggccaattaggtgctctagtgagaattagatgaaaatcatggcatgccttatgtcctaagatttggcatttctttctcttaggagttgatatgctt |
1056189 |
T |
|
| Q |
201 |
tttaggggtctatgatgtggtgtctcacatgggtaatatgtagtttgtttagtaaggcttgtatttatttatcatccaattttctttatatctttattca |
300 |
Q |
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| T |
1056188 |
tttaggggtctatgatgtggtgtctcacatgggtaatatgtagtttgtttagtaaggcttgtatttatttatcatccaattttctttatatctttattca |
1056089 |
T |
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| Q |
301 |
attttgttaaaaaatattaactaaatgtgtgcgtagtaaatagtttaaccaagtggttgaactcaaacaattaacgaactttagttaaaaccgatttgaa |
400 |
Q |
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| T |
1056088 |
attttgttataaaaaattaacttaatgtgtgcgtagtaaatagtttaaccaagtggttgaactcaaacaattaacaaactttagttaaaactgatttgaa |
1055989 |
T |
|
| Q |
401 |
gctcctcggtttgatcnnnnnnnnnnnnnnnnaagaagttaaaatggaatataataaccaataaacttagtctccctggcacaagaagtgtccgaagaga |
500 |
Q |
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| T |
1055988 |
gctcctcggtttgatc----ttttttttttttaagaagttaaaatggaatataataaccaataaacttagtctccctggcacaagaagtgtccgaagaga |
1055893 |
T |
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| Q |
501 |
actaag |
506 |
Q |
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| T |
1055892 |
actaag |
1055887 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 53635340 - 53635267
Alignment:
| Q |
433 |
aagaagttaaaatggaatataataaccaataaacttagtctccctggcacaagaagtgtccgaagagaactaag |
506 |
Q |
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| T |
53635340 |
aagaagctaaaatgatatataataaccaagaaacttagtctctctatcacgagaagtgacataagagaactaag |
53635267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 24598833 - 24598873
Alignment:
| Q |
433 |
aagaagttaaaatggaatataataaccaataaacttagtctc |
474 |
Q |
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| T |
24598833 |
aagaagttaaaatggaatataataacc-agaaacttagtctc |
24598873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 12954933 - 12954977
Alignment:
| Q |
448 |
aatataataaccaataaacttagtctccctggcacaagaagtgtc |
492 |
Q |
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| T |
12954933 |
aatataataaccaagaaacttagtccctctagcacaagaagtgtc |
12954977 |
T |
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