View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_60 (Length: 251)
Name: NF9771_low_60
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_60 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 1912154 - 1911912
Alignment:
| Q |
11 |
caaaggtgagctaacaaaaattgctaagacnnnnnnnn--gttcactaaattagtttcactctaactctatatatatttaccaaacattcccctttagcc |
108 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1912154 |
caaaggtgagctaacaaaaattgctaagacttttttttttgttcactaaattagtttcactctaactctatatatatttaccaaacattcccctttagcc |
1912055 |
T |
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| Q |
109 |
tcacatacaatttcaaaccatatctcccatttgcatattttgcaacattcctcttcattcttaaccatggcctcaaagaaatccttcatcataattttct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1912054 |
tcacatacaatttcaaaccatatctcccatttgcatattttgcaacattcctcttcattcttaaccatggcctcaaagaaatccttcatcataattttct |
1911955 |
T |
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| Q |
209 |
tttttgctttaagcttctcaaacatgagcttgagcctagcagc |
251 |
Q |
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| T |
1911954 |
tttttgctttaagcttctcaaacatgagcttgagcctagcagc |
1911912 |
T |
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