View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9771_low_62 (Length: 250)

Name: NF9771_low_62
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9771_low_62
NF9771_low_62
[»] chr8 (5 HSPs)
chr8 (1-238)||(1349769-1350006)
chr8 (1-238)||(1360427-1360664)
chr8 (10-237)||(11366585-11366812)
chr8 (32-238)||(1343320-1343529)
chr8 (32-238)||(1356058-1356267)
[»] chr7 (2 HSPs)
chr7 (34-214)||(13589841-13590021)
chr7 (10-217)||(29389250-29389457)
[»] chr2 (2 HSPs)
chr2 (37-237)||(43369274-43369474)
chr2 (3-225)||(43365092-43365311)
[»] chr3 (1 HSPs)
chr3 (8-121)||(24617859-24617972)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1350006 - 1349769
Alignment:
Q  1 attttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1350006 attttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgaggaagacatat 1349907  T
Q  101 tggagaactcttggaagatccagtgcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaacca 200  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1349906 tggagaactcttgcaagatccagttcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctacttgttggattgaacca 1349807  T
Q  201 tcacaagtttgaagccacacataagaattcatcatctc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1349806 tcacaagtttgaagccacacataagaattcatcatctc 1349769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1360664 - 1360427
Alignment:
Q  1 attttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatat 100  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||| |||| ||||||||| || ||||||||||||    
T  1360664 attttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatat 1360565  T
Q  101 tggagaactcttggaagatccagtgcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaacca 200  Q
    || |||||||||||||||||| || ||||||| | ||||||||||  |||| |||||| ||| |||||||||||||  ||| | |  |||||||||| |     
T  1360564 tgcagaactcttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcg 1360465  T
Q  201 tcacaagtttgaagccacacataagaattcatcatctc 238  Q
    |||||||||| |||||| |||||||  |||| ||||||    
T  1360464 tcacaagttttaagccatacataaggcttcaccatctc 1360427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 11366812 - 11366585
Alignment:
Q  10 ccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaact 109  Q
    ||||||| ||| ||||| |||  ||||||||| |||| |||||||||||| |||||| || ||||||||| ||||||||||||||||||| || | || |    
T  11366812 ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt 11366713  T
Q  110 cttggaagatccagtgcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatcacaagtt 209  Q
    |||||||| |||| ||||||||||||||||||||||  |||| || ||  ||| ||| ||||||||||| || | ||||||||||||  ||||  |||||    
T  11366712 cttggaagttccattgcctttttgtaatatttcttgacatataaatggacaaaacatcgcaatctcttgttccacttgttggattgattcatcggaagtt 11366613  T
Q  210 tgaagccacacataagaattcatcatct 237  Q
    ||||||||||||||||  ||||||||||    
T  11366612 tgaagccacacataaggcttcatcatct 11366585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 1343529 - 1343320
Alignment:
Q  32 gtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaactcttggaagatccagtgcctttt 131  Q
    |||||||||| ||||||||||||||||| || | || | ||||||| | ||||||||||||||||||||||||||| |||||||||||||              
T  1343529 gtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatccttgttgagga 1343430  T
Q  132 tgtaatatt---tcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatcacaagtttgaagccacacataagaat 228  Q
     ||||||||   |||||  |||| |||||  ||| ||||||||||||||| || |  |||||||||||||||||| | ||||||||||||||| ||| ||    
T  1343429 agtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacctgttggattgaaccatcataggtttgaagccacacacaaggat 1343330  T
Q  229 tcatcatctc 238  Q
    ||||||||||    
T  1343329 tcatcatctc 1343320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 1356058 - 1356267
Alignment:
Q  32 gtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaactcttggaagatccagtgcctttt 131  Q
    |||||||||| ||||||||||||||||| || | || | ||||||| | ||||||||||||||||||||||||||| |||||||||||||              
T  1356058 gtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatccttgttgagga 1356157  T
Q  132 tgtaatatt---tcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatcacaagtttgaagccacacataagaat 228  Q
     ||||||||   |||||  |||| |||||  ||| ||||||||||||||| || |  |||||||||||||||||| | ||||||||||||||| ||| ||    
T  1356158 agtaatattaactcttgacatataaaaggacaaaacattgcaatctcttgttccacatgttggattgaaccatcataggtttgaagccacacacaaggat 1356257  T
Q  229 tcatcatctc 238  Q
    ||||||||||    
T  1356258 tcatcatctc 1356267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 13590021 - 13589841
Alignment:
Q  34 gatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaactcttggaagatccagtgcctttttg 133  Q
    |||||||||||||||| |||||||||||| |||||| ||||| |||||| | || |||||||||||||| ||| |||| |||| ||||  | ||||||||    
T  13590021 gatgaaattgacaatattcaagaattgagttcaacattgcagaacttacctctttaggaagacatattgcagagctctcggaaaatcccatccctttttg 13589922  T
Q  134 taatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatcacaagtttgaag 214  Q
     |||||||||||  ||||||||||| ||| ||||||||||||||| || | ||||||||||||||||||||||||||||||    
T  13589921 caatatttcttgacatatgaaagggcaaaacattgcaatctcttgttccacttgttggattgaaccatcacaagtttgaag 13589841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 29389250 - 29389457
Alignment:
Q  10 ccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaact 109  Q
    ||||||| ||| ||||| |||  ||||||||  ||||||||||||||| | |||||||||  ||||||   |||| || |||||||||||| | | || |    
T  29389250 ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt 29389349  T
Q  110 cttggaagatccagtgcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatcacaagtt 209  Q
     ||||||||||| ||||||||||||| |||||||||  | || | |||| ||| ||||||||| ||||| || |  ||||| |||||||||||  ||||     
T  29389350 tttggaagatcccgtgcctttttgtattatttcttgacaaataagagggcaaaacattgcaatttcttgttccacctgttgaattgaaccatccgaagtc 29389449  T
Q  210 tgaagcca 217  Q
    ||||||||    
T  29389450 tgaagcca 29389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 43369274 - 43369474
Alignment:
Q  37 gaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaactcttggaagatccagtgcctttttgtaa 136  Q
    ||||| ||||||||| ||||||| ||||| ||| || || ||| || ||||||||||||||| ||| | || ||||||||||||| ||||||||||| ||    
T  43369274 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa 43369373  T
Q  137 tatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatcacaagtttgaagccacacataagaattcatcatc 236  Q
    ||||||||    ||| || ||| ||| ||||||||| ||||| || | |||||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  43369374 tatttctttacgtataaatgggcaaaacattgcaatatcttgttccacttgttgaattgaaccatcagaagtttgaagccacacataagacttcatcatc 43369473  T
Q  237 t 237  Q
    |    
T  43369474 t 43369474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 43365092 - 43365311
Alignment:
Q  3 tttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattg 102  Q
    |||| ||||||||| ||| ||||| ||   ||||||||| ||||||||| ||||||  ||||| ||| || || ||| || |||||||||||||||| ||    
T  43365092 tttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactg 43365191  T
Q  103 gagaactcttggaagatccagtgcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctatttgttggattgaaccatc 202  Q
     | || |||||||||||||  |||||||||| ||   |||||   |||| || ||| ||| ||||||||| ||||| || | ||||||| ||||||||||    
T  43365192 cacaattcttggaagatcccatgcctttttgcaa---ttcttcacatataaatgggcaaaacattgcaatatcttgctccacttgttgggttgaaccatc 43365288  T
Q  203 acaagtttgaagccacacataag 225  Q
    | |||||||||||||||||||||    
T  43365289 agaagtttgaagccacacataag 43365311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 24617972 - 24617859
Alignment:
Q  8 ttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgcaggacttacttgttgaggaagacatattggagaa 107  Q
    ||||||||| ||||||||||||| ||||| |||| ||||||||||||||||| || | |||| ||||||| | |||||||||||||||||||||||||||    
T  24617972 ttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaa 24617873  T
Q  108 ctcttggaagatcc 121  Q
     |||||||||||||    
T  24617872 gtcttggaagatcc 24617859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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