View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9771_low_65 (Length: 250)

Name: NF9771_low_65
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9771_low_65
NF9771_low_65
[»] chr4 (17 HSPs)
chr4 (58-240)||(36627530-36627712)
chr4 (7-220)||(35968848-35969061)
chr4 (10-200)||(36910090-36910280)
chr4 (50-207)||(20211229-20211386)
chr4 (81-202)||(36642956-36643077)
chr4 (6-200)||(18364736-18364930)
chr4 (6-200)||(36597995-36598189)
chr4 (8-197)||(36629855-36630035)
chr4 (21-217)||(36612711-36612907)
chr4 (113-197)||(36636305-36636389)
chr4 (8-71)||(36643120-36643183)
chr4 (31-208)||(29677038-29677216)
chr4 (97-200)||(38862637-38862742)
chr4 (31-208)||(28125361-28125537)
chr4 (8-71)||(36665397-36665460)
chr4 (157-207)||(55966197-55966247)
chr4 (158-195)||(36665240-36665277)
[»] chr1 (1 HSPs)
chr1 (17-202)||(42602242-42602425)
[»] chr8 (1 HSPs)
chr8 (81-202)||(35336356-35336477)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 36627712 - 36627530
Alignment:
Q  58 gccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcata 157  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36627712 gccaatttagctatgcgtggtatttcatcaaactttttcaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtataccttttcata 36627613  T
Q  158 aaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcagtaatgtattcaatcggggataaagctcctatg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36627612 aaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcagtaatgtattcaatcggggataaagctcctatg 36627530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 35968848 - 35969061
Alignment:
Q  7 ggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagc 106  Q
    |||||| || || ||||||||||||||||||| |||||| |||||||||||| | |||||||||||| |  || |||||| || |||||| |||| |||     
T  35968848 ggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacacttgtcgatttagctatgcatcataattcatctaatttttcccaaattgagt 35968947  T
Q  107 tatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgc 206  Q
    | | |||||| |||||||| |||||||   |||||||||  |||  ||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35968948 tgtctactcctagtctttgcacctttactattaccggtattcctaatcagaaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgatgc 35969047  T
Q  207 agtaatgtattcaa 220  Q
    |  |||| ||||||    
T  35969048 aaaaatgcattcaa 35969061  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 36910090 - 36910280
Alignment:
Q  10 tgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctat 109  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||  |||  | || || |    |||||  |||| || || |||    
T  36910090 tgtgaggtaaaggatgctcaaatcctcaacatatcaagtgagacacttgtcaatttagccctgcacgataatttacttgactttgtcaaattcaagttat 36910189  T
Q  110 ttactccaagtctttgtacctttaagtttaccggtagacctt-ttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatat 200  Q
     | |||||||||||||||||||||  ||||||||| |||||| |||| ||||||| ||||||| |||| |||||| ||||||||||||||||    
T  36910190 ctgctccaagtctttgtacctttacttttaccggt-gaccttcttcagaaaatatatgggagcagtctctcttctattaaacaagtaaatat 36910280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 20211386 - 20211229
Alignment:
Q  50 agacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagacc 149  Q
    ||||||||| || ||||||||||| |  |  ||||||  ||||| ||||||| ||| ||| |  ||| ||||||||||||||||  ||||||||||  ||    
T  20211386 agacacttgtcattttagctatgcataatgattcatccgactttgccaaaattgagttatctggtccgagtctttgtacctttacttttaccggtattcc 20211287  T
Q  150 ttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgca 207  Q
    |  ||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  20211286 tgatcagaaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgca 20211229  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 36643077 - 36642956
Alignment:
Q  81 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttct 180  Q
    |||||| || ||| ||||||| ||||||| |||||||||||||||||| ||||  ||||  ||||| | | |||| |||||||| |||||||| |||||     
T  36643077 ttcatccaaatttgccaaaatagagctatctactccaagtctttgtacatttacttttattggtagtcttattcaaaaaatatgcgggagcggactttcc 36642978  T
Q  181 tctgttaaacaagtaaatattg 202  Q
    ||||||||||||||||||||||    
T  36642977 tctgttaaacaagtaaatattg 36642956  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 18364736 - 18364930
Alignment:
Q  6 tggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgag 105  Q
    ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || |||| |  |  ||| ||||   || |||||||||||    
T  18364736 tggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgcattattgttcttcaagaattgccaaaatcgag 18364835  T
Q  106 ctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatat 200  Q
     ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |||||| |||||||||| || |||||||    
T  18364836 ttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcagtcttttttctgttaaaaaaataaatat 18364930  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 36598189 - 36597995
Alignment:
Q  6 tggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgag 105  Q
    ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || |||| |  |  ||| ||||   || |||||||||||    
T  36598189 tggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgcattattgttcttcaagaattgccaaaatcgag 36598090  T
Q  106 ctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatat 200  Q
     ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |||||| |||||||||| || |||||||    
T  36598089 ttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcagtcttttttctgttaaaaaaataaatat 36597995  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 36629855 - 36630035
Alignment:
Q  8 gttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagct 107  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||| |||| ||| |||||  ||| || ||         ||||| ||||||| |||||    
T  36629855 gttgtgaggtaaaggatgctcaaatcctcagcatatcaagtgagacccttgtcaagttagcattgcttgata---------actttgccaaaattgagct 36629945  T
Q  108 atttactccaagtctttgtacctttaagtttaccggtagacctt-ttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaa 197  Q
    || |  |||||||||||||||||| |  ||||||||| |||||| |||| ||||| ||||||||| |||| |||||| |||||||||||||    
T  36629946 atctgttccaagtctttgtaccttcacttttaccggt-gaccttattcagaaaatttgtgggagcagtctctcttctattaaacaagtaaa 36630035  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 36612907 - 36612711
Alignment:
Q  21 ggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagt 120  Q
    |||||| |||| |||||  |||||| | |||||||| |  ||||||||||||| ||  | |||||   |||||  ||||||  || |||||||||  |||    
T  36612907 ggatgcacaaaccctcaggatatcaagcgagacactagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactcagagt 36612808  T
Q  121 ctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcagtaatgtatt 217  Q
    |||||||||||||  | |||||||   |||  ||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  36612807 ctttgtacctttacttataccggtcatcctgatcagagaatatgtgggagtggtctttcttctgttaaactagtaaatattgctgcagaaatatatt 36612711  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 36636389 - 36636305
Alignment:
Q  113 ctccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaa 197  Q
    |||||||||||||||||||||  ||||| ||||  ||| |||| |||||||||||||| |||||||||||||| |||||||||||    
T  36636389 ctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttcttctgtcaaacaagtaaa 36636305  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 36643183 - 36643120
Alignment:
Q  8 gttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 71  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36643183 gttgtaagataaaggatgctcaaatcctcaacatatcaagtgagacacttgtcaatttagctat 36643120  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 29677038 - 29677216
Alignment:
Q  31 atcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactcca-agtctttgtacc 129  Q
    ||||| ||||||||| | |||||||||| |||||||| || || | |||  |||||  ||||| | ||||| ||| ||| ||||||  ||||||||||||    
T  29677038 atcctaaacatatcaagcgagacacttgtcaatttagatacgcatagtaagtcatccgactttgcaaaaattgagttatctactcctgagtctttgtacc 29677137  T
Q  130 tttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcag 208  Q
     |||  || || ||||| |||  |||  |||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  29677138 cttactttcactggtagtcctgatcagcaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgcag 29677216  T

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Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 38862742 - 38862637
Alignment:
Q  97 aaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtg--ggagcggtctttcttctgttaaacaagt 194  Q
    ||||| ||||||| |||||||||||| ||||||||||  |||| |||||| |||  ||||| ||||||||  |||| ||||||||||||||||||| |||    
T  38862742 aaaattgagctatctactccaagtctatgtacctttacttttagcggtagtcctaatcatataatatgtgtgggagtggtctttcttctgttaaacgagt 38862643  T
Q  195 aaatat 200  Q
    ||||||    
T  38862642 aaatat 38862637  T

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Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 28125361 - 28125537
Alignment:
Q  31 atcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacct 130  Q
    ||||| ||||||||| | |||||||||| |  ||||||||||| |  |  ||||||  ||||| ||||||| ||| ||| |  ||| ||||||||| |||    
T  28125361 atcctaaacatatcaagcgagacacttgtcgttttagctatgcataatgattcatccgactttgccaaaattgag-tatctggtccgagtctttgttcct 28125459  T
Q  131 ttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcag 208  Q
    |||  ||||||||||  |||  ||| ||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  28125460 ttacttttaccggtattcctgatcagaaaatatgtggaagcagtctttcttctgtgaaacatgtaaatattgctgcag 28125537  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 36665460 - 36665397
Alignment:
Q  8 gttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 71  Q
    ||||| || ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  36665460 gttgtaaggtaaaggatgctcaaatcctcaccatatcaagtgatacacttgccaatttagctat 36665397  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 55966247 - 55966197
Alignment:
Q  157 aaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgca 207  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  55966247 aaaatatgtgggagtgctctttcttctgttaaacaagtaaatattggtgca 55966197  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 36665277 - 36665240
Alignment:
Q  158 aaatatgtgggagcggtctttcttctgttaaacaagta 195  Q
    |||||||||||||||| |||||||||||||||||||||    
T  36665277 aaatatgtgggagcggactttcttctgttaaacaagta 36665240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 42602425 - 42602242
Alignment:
Q  17 taaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactcc 116  Q
    |||| ||||| ||||||||||  |||||| |||||||||||| |||||||||||||| |  |||||||||   |||| ||||||||||| ||| | ||||    
T  42602425 taaaagatgcacaaatcctcaggatatcaagtgagacacttgtcaatttagctatgcataatatttcatcttcctttaccaaaatcgagttatctgctcc 42602326  T
Q  117 aagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattg 202  Q
    ||| |||||| | ||||   | | ||| || | |  ||| |||||||||||||||||||  |||||||||||||| ||||||||||    
T  42602325 aagcctttgtgcatttactatcaacggcagtcttgatcagaaaatatgtgggagcggtc--tcttctgttaaacatgtaaatattg 42602242  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 202
Target Start/End: Original strand, 35336356 - 35336477
Alignment:
Q  81 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttt-tcataaaatatgtgggagcggtctttc 179  Q
    |||||| |||||| |||||||| |||| |  ||||||| ||||||||| ||||  ||| || | | |||||  ||| |||||||||||||||||||||||    
T  35336356 ttcatctaactttgccaaaatctagctttcaactccaaatctttgtacatttacttttcccagaa-accttgatcagaaaatatgtgggagcggtctttc 35336454  T
Q  180 ttctgttaaacaagtaaatattg 202  Q
    |||||||||||||||||| ||||    
T  35336455 ttctgttaaacaagtaaacattg 35336477  T

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