View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9771_low_66 (Length: 250)

Name: NF9771_low_66
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9771_low_66
NF9771_low_66
[»] chr4 (2 HSPs)
chr4 (10-250)||(22902841-22903081)
chr4 (10-250)||(22954509-22954749)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 22902841 - 22903081
Alignment:
Q  10 gcacagaaacaacttcaatagcattcacaaaagcagtggaattgttcgatggggtaaaggtgatgacaagtgtgtctaaggtcacatttaccaagtactc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22902841 gcacagaaacaacttcaatagcattcacaaaagcagtggaattgttcgatggggtaaaggtgatgacaagtgtgtctaaggtcacatttaccaagtactc 22902940  T
Q  110 cttcataacaggannnnnnnccggcacactaaagctactaagaaggatattatgttctgtggtaatagcaaaatttgcagcactaagattgtaattttga 209  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22902941 cttcataacaggattttttttcggcacactaaagctactaagaaggatattatgttctgtggtaacagcaaaatttgcagcactaagattgtaattttga 22903040  T
Q  210 taggaaaatggaaagaaataaagacggatccaatgcctacc 250  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  22903041 tacgaaaatggaaagaaataaagacggatccaatgcctacc 22903081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 22954509 - 22954749
Alignment:
Q  10 gcacagaaacaacttcaatagcattcacaaaagcagtggaattgttcgatggggtaaaggtgatgacaagtgtgtctaaggtcacatttaccaagtactc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22954509 gcacagaaacaacttcaatagcattcacaaaagcagtggaattgttcgatggggtaaaggtgatgacaagtgtgtctaaggtcacatttaccaagtactc 22954608  T
Q  110 cttcataacaggannnnnnnccggcacactaaagctactaagaaggatattatgttctgtggtaatagcaaaatttgcagcactaagattgtaattttga 209  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22954609 cttcataacaggattttttttcggcacactaaagctactaagaaggatattatgttctgtggtaacagcaaaatttgcagcactaagattgtaattttga 22954708  T
Q  210 taggaaaatggaaagaaataaagacggatccaatgcctacc 250  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  22954709 tacgaaaatggaaagaaataaagacggatccaatgcctacc 22954749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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