View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_69 (Length: 249)
Name: NF9771_low_69
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 36949295 - 36949070
Alignment:
| Q |
18 |
gcaaggtttgatacccctctctcccttgtcttttcaatgtttccaatcaatagcatacaatttatctgattttttgtgaagctatctaatttgcttaaga |
117 |
Q |
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| T |
36949295 |
gcaaggtttgatacccctctctcccttgtcttttcaatgtttccaatcaatagca----atttatctgattttttgtgaagctatctaatttgcttaaga |
36949200 |
T |
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| Q |
118 |
taatttcaggttattgtcttgaatatggatttatcacttaagcaagcatttcatattctttatgaacaggtaagttctcccctccttcattacactattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36949199 |
taatttcaggttattgtcttgaatatggatttatcacttaagcaagcatttcatattctttatgaacaggtaagttctcccctccttcattacactattt |
36949100 |
T |
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| Q |
218 |
acatgaggtgttattcatcaattcttcttc |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36949099 |
acatgaggtgttattcatcaattcttcttc |
36949070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 10818623 - 10818728
Alignment:
| Q |
18 |
gcaaggtttgatacccctctctcccttgtcttttcaatgtttccaatcaatagcatacaatttatctgattttttgtgaagctatctaatttgcttaaga |
117 |
Q |
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|||||||||||||| ||||||| | | || ||||||||||||| ||||||||| |||||| |||||||| ||||||||| |||||||||||| |
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| T |
10818623 |
gcaaggtttgatacacctctcttc--tctcccttcaatgtttccattcaatagca----atttatttgatttttagtgaagcta----atttgcttaaga |
10818712 |
T |
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| Q |
118 |
taatttcaggttattg |
133 |
Q |
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| T |
10818713 |
taatttcaggttattg |
10818728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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