View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_7 (Length: 515)
Name: NF9771_low_7
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 11227848 - 11227597
Alignment:
| Q |
27 |
tgttgtgactgaacatttggaattaaggacggaccagactgattattgttgctttgttggtgttgtggctggacatttggaattaaggaagggccagact |
126 |
Q |
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| T |
11227848 |
tgttgtggctgaataatgggaattaaggaagggccagactgattattgttgctttgttggtgttatggctgaacatttggaattaaggaagggccagact |
11227749 |
T |
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| Q |
127 |
gattgttgttagtttgttggtgttgtggatgaacttcattttccatatttac---ttgaacttctagccctcgtcgtaacctttctagcatatcttttct |
223 |
Q |
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| T |
11227748 |
gattgttgttgctttgttggtgttgtggatgaacttcattttccgtatttccagactgattgttgttacctcgtcgtaacctttctagcatatcttttcc |
11227649 |
T |
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| Q |
224 |
tgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgct |
275 |
Q |
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| T |
11227648 |
tgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgct |
11227597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 358 - 497
Target Start/End: Complemental strand, 11227519 - 11227380
Alignment:
| Q |
358 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaactatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactactct |
457 |
Q |
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| T |
11227519 |
gtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcacaaaatgttcatataattaaactactct |
11227420 |
T |
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| Q |
458 |
aacatgaaattatcatcttcatcactgtagttattatgat |
497 |
Q |
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| T |
11227419 |
aacatgaaattagcatcttcatcactacagttattatgat |
11227380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 11227797 - 11227721
Alignment:
| Q |
18 |
ctttgttggtgttgtgactgaacatttggaattaaggacggaccagactgattattgttgctttgttggtgttgtgg |
94 |
Q |
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| T |
11227797 |
ctttgttggtgttatggctgaacatttggaattaaggaagggccagactgattgttgttgctttgttggtgttgtgg |
11227721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 480
Target Start/End: Complemental strand, 10128187 - 10128065
Alignment:
| Q |
358 |
gtacaaagttcataaaacttaattgagttgaaaagcacaataaa--ctatgacttatagcttatcagaaaagcacaaaatgttcatataattaaactact |
455 |
Q |
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| T |
10128187 |
gtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacataatgttcatataattaaac--ca |
10128090 |
T |
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| Q |
456 |
ctaacatgaaattatcatcttcatc |
480 |
Q |
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| T |
10128089 |
ctaacattaaattatcatgttcatc |
10128065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 10128340 - 10128266
Alignment:
| Q |
201 |
aacctttctagcatatcttttcttgaagacttgcgttttgacttcatctcgaatcaaatatctgcacaatttgct |
275 |
Q |
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| T |
10128340 |
aacctttctaccatatcttttcctggagacttgcatttctacttcatcttaaatcaaatatctgcacaatttgct |
10128266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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