View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_71 (Length: 249)
Name: NF9771_low_71
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 44093078 - 44093203
Alignment:
| Q |
24 |
tttacaagaccatattaccatccaacattttcaacttctggcctctcaagtccaccagtgaccatacacatcatagattgaaactgttgtctacccaatg |
123 |
Q |
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| T |
44093078 |
tttacaagaccatattaccatccaacattttcaacttctggcctctcaagtccaccagtgaccatacacatcatagattgaaactgttgtctacccaacg |
44093177 |
T |
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| Q |
124 |
aatgcaattgttttgtcatgcatact |
149 |
Q |
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| T |
44093178 |
aatgcaattgttttgtcatgcatact |
44093203 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 39278636 - 39278738
Alignment:
| Q |
24 |
tttacaagaccatattaccatccaacattttcaacttctggcctctcaagtccaccagtgaccatacacatcatagattgaaactgttgtctacccaatg |
123 |
Q |
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| T |
39278636 |
tttacaagatcatactcccatcccacattttgaacttctggactctcttctccaccagtggccatacacatcagagattgaaattgttgacggcccaatg |
39278735 |
T |
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| Q |
124 |
aat |
126 |
Q |
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||| |
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| T |
39278736 |
aat |
39278738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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