View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_78 (Length: 237)
Name: NF9771_low_78
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22903097 - 22903320
Alignment:
| Q |
1 |
aaatgtgtactttgaagatgaaatgaagattcttgcagtttgataaagaggtgaaaaatcagtggtggaattgattgatttcaaggtggtatttgcaaga |
100 |
Q |
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| T |
22903097 |
aaatgtgtactttgaagatgaaatgaagattcttgcagtttgataaagaggtgaaaaatcagtggtggagttgattgatttcaaggtggtatttgcaaga |
22903196 |
T |
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| Q |
101 |
atatcttcttgtgttgaaaggaaattcttaaagaaagtatctgatgtgaaattgaggttactacctattgaagtatttgtatgtgatccacaatctataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22903197 |
atatcttcttgtgttgaaaggaaattcttaaagaaagtatctgatgtgaaattgaggttactacctattgaagtatttgtatgtgatccacaatctataa |
22903296 |
T |
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| Q |
201 |
ggtaattatctataggaacaaagt |
224 |
Q |
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| |||||||||||||||||||||| |
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| T |
22903297 |
gataattatctataggaacaaagt |
22903320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22954765 - 22954988
Alignment:
| Q |
1 |
aaatgtgtactttgaagatgaaatgaagattcttgcagtttgataaagaggtgaaaaatcagtggtggaattgattgatttcaaggtggtatttgcaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22954765 |
aaatgtgtactttgaagatgaaatgaagattcttgcagtttgataaagaggtgaaaaatcagtggtggagttgattgatttcaaggtggtatttgcaaga |
22954864 |
T |
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| Q |
101 |
atatcttcttgtgttgaaaggaaattcttaaagaaagtatctgatgtgaaattgaggttactacctattgaagtatttgtatgtgatccacaatctataa |
200 |
Q |
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| T |
22954865 |
atatcttcttgtgttgaaaggaaattcttaaagaaagtatctgatgtgaaattgaggttactacctattgaagtatttgtatgtgatccacaatctataa |
22954964 |
T |
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| Q |
201 |
ggtaattatctataggaacaaagt |
224 |
Q |
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| |||||||||||||||||||||| |
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| T |
22954965 |
gataattatctataggaacaaagt |
22954988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 41050327 - 41050373
Alignment:
| Q |
5 |
gtgtactttgaagatgaaatgaagattcttgcagtttgataaagagg |
51 |
Q |
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||||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
41050327 |
gtgtactttgaagatccagtaaagattcttgcagtttgataaagagg |
41050373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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