View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_79 (Length: 237)
Name: NF9771_low_79
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1911749 - 1911507
Alignment:
| Q |
1 |
caccccaccaccttccaccaccagtccttaaacacactttcacttgttcatcttcctttgacttttgtactctacaaggttacacagtgtgtgtttaatt |
100 |
Q |
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| T |
1911749 |
caccccaccaccttccaccaccagtccttaaacacactttcacttgttcatcttcctttgacttttgtactctacaaggttacacagtgtgtgtttaatt |
1911650 |
T |
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| Q |
101 |
agtacgtggaatgcatgcaatatata--------------------tatagtttgattactttcttatattaatactagttatataccggtgcaatgcac |
180 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1911649 |
agtacgtggaatgcatgcaatatatatatatatatatatatatatatatagtttgattactttcttatattaatactagttatataccggtgcaatgcac |
1911550 |
T |
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| Q |
181 |
cggttatatgtaataatggaacccatatgttgcatgagaaatg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1911549 |
cggttatatgtaataatggaacccatatgttgcatgagaaatg |
1911507 |
T |
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