View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_8 (Length: 509)
Name: NF9771_low_8
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 35195487 - 35195976
Alignment:
| Q |
1 |
cattaacaattgattgaaatgtaaaacagagccacctaattcacgtgctttttaatattcatacaaccggatcttacatatatagacagatttggcagat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35195487 |
cattaacaattgattgaaatgtaaaagagagccacctaattcacgtgctttttaatattcatacaaccggatcttacatatatagacagatttggcagat |
35195586 |
T |
|
| Q |
101 |
tgttcatcaagatattgattgaatgaatgagttagagaaatgtaatcctgaggtgaggtaggtaacttgagatgtcaggtgatctggtcaatagggaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35195587 |
tgttcatcaagatattgattgaatgaatgagttagagaaatgtaatcctgaggtgaggtaggtaacttgagatgtcaggtgatctggtcaattgggaagg |
35195686 |
T |
|
| Q |
201 |
tgagaacagtttcctgtggtgggaccaattgatgaacagaattgtttgtcatgagaatcatgcatgttgtaggcatgcaactactatttatgaaaaccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35195687 |
tgagaacagtttcctgtggtgggaccaattgatgaacagaattgtttgtcatgagaatcatgcatgttgcaggcatgcaactactatttatgaaaaccaa |
35195786 |
T |
|
| Q |
301 |
gtcttgcattcgtacatgacattcctgcagagtccactcatatggtggtgggcataaaaatcagtcttttcttaaataaattaaactaggactatgtttt |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35195787 |
gtcttgtattcgtacatgacattcctgcagagtccactcatatggtggtgggcataaaaatcagtcttttcttaaataaattaaactaggactatgtttt |
35195886 |
T |
|
| Q |
401 |
gnnnnnnnacaaaagaaactaggactatgctagtagctagacatataaatttagtaacttatacgattttgaattattaaggtttgatat |
490 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35195887 |
gtttttttacaaaagaaactaggactatgctagtagctagacatataaatttagtaacttatacgattttgaattattaagatttgatat |
35195976 |
T |
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