View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_80 (Length: 237)
Name: NF9771_low_80
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2228841 - 2228619
Alignment:
| Q |
1 |
caataacatcttgaaacccaaagattaacttcatctgtttcaccagtctgtccaaattcttactggtaagtgcgcaacaatattcccattggaattcatg |
100 |
Q |
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| T |
2228841 |
caataacatcttgaaacctaaagattaacttcatctgtttcaccagtctgtccaaattcttactggtaagtgcgcaacaatatttttattggaattcatg |
2228742 |
T |
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| Q |
101 |
attgatcttcttgttggatcaaagtaatgttaggctctggataccaattgttaggggaaacaattgattctagggtttatgattttatgtgcttgaagat |
200 |
Q |
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| T |
2228741 |
attgatcttcttgttggatcaaagtaatgttaggctctgaataccaattgttaggggaaacaattgattctagggtttatgattttatgtgcttgaagat |
2228642 |
T |
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| Q |
201 |
taagaaacagtttaggaagaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2228641 |
taagaaacagtttaggaagaatg |
2228619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 33699248 - 33699150
Alignment:
| Q |
64 |
tggtaagtgcgcaacaatattcccattggaattcatgattgatcttcttgttggatcaaagtaatgttaggctctggataccaattgttaggggaaaca |
162 |
Q |
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| T |
33699248 |
tggtaagtgcgcaacagtattcgcattgaaattcatgattgatcttcttcttggatcaaagtaatgtatggctctggataccaattgttaggggaaaca |
33699150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 33682191 - 33682093
Alignment:
| Q |
64 |
tggtaagtgcgcaacaatattcccattggaattcatgattgatcttcttgttggatcaaagtaatgttaggctctggataccaattgttaggggaaaca |
162 |
Q |
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| T |
33682191 |
tggtaagtgcgcagcaatattccgatcggaattcatgattgatattcttcttggatcaaactagtgtatggctctggataccaattgttaggggaaaca |
33682093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 12197827 - 12197866
Alignment:
| Q |
5 |
aacatcttgaaacccaaagattaacttcatctgtttcacc |
44 |
Q |
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| T |
12197827 |
aacatcttgaaacccaaagatcaccttcatctgtttcacc |
12197866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 25518558 - 25518591
Alignment:
| Q |
149 |
tgttaggggaaacaattgattctagggtttatga |
182 |
Q |
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| T |
25518558 |
tgttaggggaaacaattgactctagggtttatga |
25518591 |
T |
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