View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_81 (Length: 235)
Name: NF9771_low_81
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1349992 - 1350211
Alignment:
| Q |
1 |
acaaggaaagaaaattgtatgatgcgaaatttgttaggatagaccctgacatactctttgcattggcatttgctgcaaaaagccttcaattaaagccatt |
100 |
Q |
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| T |
1349992 |
acaaggaaagaaaattgtatgatgcgaaatttgttaggatagaccctgacatactctttgcattggcatttgctgcaaaaagccttcaattaaagccatt |
1350091 |
T |
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| Q |
101 |
aaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctcatgatcttacagaggaa |
200 |
Q |
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| T |
1350092 |
aaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctcatgatcttacagaggaa |
1350191 |
T |
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| Q |
201 |
gagatattggagtcaattat |
220 |
Q |
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| T |
1350192 |
gagatattggagtcaattat |
1350211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 1343616 - 1343749
Alignment:
| Q |
71 |
tgctgcaaaaagccttcaattaaagccattaaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatg |
170 |
Q |
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| T |
1343616 |
tgctgcaaaataccttcagttaaatccattgtatgatctcacatgtcatgcaataactagaataattgaaggaaaatcatctgaggagatacgcgacata |
1343715 |
T |
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| Q |
171 |
tttatttggcctcatgatcttacagaggaagaga |
204 |
Q |
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| T |
1343716 |
tttcatttgcctgatgatcttatggaggaagaga |
1343749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 1355971 - 1355838
Alignment:
| Q |
71 |
tgctgcaaaaagccttcaattaaagccattaaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatg |
170 |
Q |
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| T |
1355971 |
tgctgcaaaataccttcagttaaatccattgtatgatctcacatgtcatgcaataactagaataattgaaggaaaatcatctgaggagatacgcgacata |
1355872 |
T |
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| Q |
171 |
tttatttggcctcatgatcttacagaggaagaga |
204 |
Q |
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| T |
1355871 |
tttcatttgcctgatgatcttatggaggaagaga |
1355838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 1360650 - 1360818
Alignment:
| Q |
1 |
acaaggaaagaaaattgtatgatgcgaaatttgttaggatagaccctgacatactctttgcattggcatttgctgcaaaaagccttcaattaaagccatt |
100 |
Q |
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| T |
1360650 |
acaaggaaagaaaattgtatgatgaggaatttgttaggatagtggctgacaacctctttgagctggcatatgctgcatacaaccttcagttgaagccatt |
1360749 |
T |
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| Q |
101 |
aaatgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacat |
169 |
Q |
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| T |
1360750 |
gattgatctcacatgtcatgaaatagctcgaacagtggaaataaaatcaccaaaggagatttgcgacat |
1360818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 11366926 - 11367106
Alignment:
| Q |
18 |
tatgatgcgaaatttgttaggatagaccctgacatactctttgcattggcatttgctgcaaaaagccttcaattaaagccattaaatgatctcacatgtc |
117 |
Q |
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||||||| |||||| |||||||||||| | || | |||| || ||| ||| ||||||| | |||||||| ||||||||||| ||||||||| ||| |
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| T |
11366926 |
tatgatgagaaattcgttaggatagacacagagaagctctgtgagttgacatctgctgcagacagccttcagttaaagccattggttgatctcaccagtc |
11367025 |
T |
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| Q |
118 |
atgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctcatgatcttacagagg |
198 |
Q |
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| T |
11367026 |
gtgctcttgctcgaataattgaaggaagatcaccggaggagatacgtgatatatttcatttgcctgatgatcttacagagg |
11367106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 24618067 - 24618176
Alignment:
| Q |
103 |
atgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctcatgatcttacagaggaaga |
202 |
Q |
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|||||||||||||||||||| |||| ||| |||| ||||||| ||| | ||||||||| |||||| ||| || |||| ||||||||| |||||||| |
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| T |
24618067 |
atgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttcatttgcctgatgatcttatggaggaaga |
24618166 |
T |
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| Q |
203 |
gatattggag |
212 |
Q |
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| T |
24618167 |
gaaattggag |
24618176 |
T |
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