View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_83 (Length: 234)
Name: NF9771_low_83
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 39494512 - 39494316
Alignment:
| Q |
19 |
aagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggacgcatgaagggttttgagtcaatgccatgtaaatttgatggaa |
118 |
Q |
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| T |
39494512 |
aagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttgacggacgcatgaagggttttgagtcaatgccatgtaaatttgatggaa |
39494413 |
T |
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| Q |
119 |
aactgatgcggcctgagttaagagagaaaaaatatgatgctttaatagaaccagaattgggtaaatgttctttttcattgcaaccatttcttttatt |
215 |
Q |
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| T |
39494412 |
aactgaagcggcctgagttaagagagaaaaaatatgatgctttaatagaaccagaattgggtaaatgttctttttcattgcaaccgtttcttttatt |
39494316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 39426633 - 39426481
Alignment:
| Q |
19 |
aagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggacgcatgaagggttttgagtcaatgccatgtaaatttgatggaa |
118 |
Q |
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| T |
39426633 |
aagaacttcaaagtacacgagaaggagctcaagccaaaagagaagcagtttgagggacgcatggagggtcttgagtcaaagccaagtgaatttgatggac |
39426534 |
T |
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| Q |
119 |
aactgatgcggcctgagttaagagagaaaaaatatgatgctttaatagaacca |
171 |
Q |
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| T |
39426533 |
agctggagcggcctgagttaagagagaaacaatatgatgctttaatagaacca |
39426481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 39130628 - 39130780
Alignment:
| Q |
19 |
aagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggacgcatgaagggttttgagtcaatgccatgtaaatttgatggaa |
118 |
Q |
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| T |
39130628 |
aagaaattcaaagtacatttgaaggatcttaagccaaaagagaagcagtttgagggatgcatgaagagtcttgagtcaaagccaagtaaatttcatggaa |
39130727 |
T |
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| Q |
119 |
aactgatgcggcctgagttaagagagaaaaaatatgatgctttaatagaacca |
171 |
Q |
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| T |
39130728 |
aaccgaagcggcctgacttaagagagaaacaatatgattctttaatagaacca |
39130780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 39124729 - 39124764
Alignment:
| Q |
136 |
ttaagagagaaaaaatatgatgctttaatagaacca |
171 |
Q |
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| T |
39124729 |
ttaagagagaaacaatatgatgctttaatagaacca |
39124764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 39192514 - 39192453
Alignment:
| Q |
15 |
agagaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggac |
76 |
Q |
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| T |
39192514 |
agagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggac |
39192453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 39198194 - 39198133
Alignment:
| Q |
15 |
agagaagaagttcaaagcacacgtgaaggagctcaagccaaaagagaagcagtttgacggac |
76 |
Q |
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|||||| |||||||||||| | |||||||||||||| |||||| ||||||||||| |||| |
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| T |
39198194 |
agagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggac |
39198133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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