View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_84 (Length: 231)
Name: NF9771_low_84
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 278127 - 277923
Alignment:
| Q |
13 |
cataggattatacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaagtttttctaggcac |
112 |
Q |
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| T |
278127 |
catagcattagacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaagtttttctaggcac |
278028 |
T |
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| Q |
113 |
aatttcatgcttgggttttctatttttagtttattcgtatattatggataaatatccatacaatcagataaggattaatttatgtctataattagatttc |
212 |
Q |
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| T |
278027 |
aatttcatccttgggttttctatttttagtttattcgtatattatggat-aatatccatacaatcgaataaggattaatttatgtctataattagatttc |
277929 |
T |
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| Q |
213 |
cttcct |
218 |
Q |
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|||||| |
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| T |
277928 |
cttcct |
277923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 289801 - 289609
Alignment:
| Q |
17 |
ggattatacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaagtttttc-taggcacaat |
115 |
Q |
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| T |
289801 |
ggattagacatatttttcaaacatgcaataagaagtttccaaaccatatgattgaatgtatcatt-taaggtcaatgtacagatttttaataggcacaat |
289703 |
T |
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| Q |
116 |
ttcatgcttgggttttctatttttagtttattcgtatattatggataaatatccatacaatcagataaggattaatttatgtctataattagatt |
210 |
Q |
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| T |
289702 |
tttatacatgggttttctatttttagtttatttacgtattatggatga-tatccatacaatcagataaggattgatttatgtctatgactagatt |
289609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 24531530 - 24531344
Alignment:
| Q |
15 |
taggattatacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatcaatctatggtcaatgtacaag-tttttctaggcaca |
113 |
Q |
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| T |
24531530 |
taggattagacatatttttcaaacatgcaataagaaatttccaaaccatatgattgaatgaatc-atctagggtcaatgtacaagttttttataggcaca |
24531432 |
T |
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| Q |
114 |
atttcatgcttgggttttctatttttagtttattcgtatattatggataaatatccatacaatcagataaggattaatttatgtctataattagatt |
210 |
Q |
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| T |
24531431 |
atttcatacatgggttttctatttttagtt--------tattattgat-gatatccatacactcagataaggattgatttatgtcaatgattagatt |
24531344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 24524041 - 24523919
Alignment:
| Q |
80 |
atctatggtcaatgtacaagtttttc-taggcacaatttcatgcttgggttttctatttttagtttattcgtatattatggataaatatccatacaatca |
178 |
Q |
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| T |
24524041 |
atctagggtcaatgtacaagttttttataggcacaatttcatacatggattttctatttttagtt--------tattattgat-gatatccatacactca |
24523951 |
T |
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| Q |
179 |
gataaggattaatttatgtctataattagatt |
210 |
Q |
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|||||||||| ||||||||| || |||||||| |
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| T |
24523950 |
gataaggattgatttatgtcaatgattagatt |
24523919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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