View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9771_low_87 (Length: 220)

Name: NF9771_low_87
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9771_low_87
NF9771_low_87
[»] chr1 (12 HSPs)
chr1 (13-204)||(47745879-47746070)
chr1 (13-204)||(47713296-47713487)
chr1 (13-204)||(47760211-47760402)
chr1 (13-204)||(47718090-47718281)
chr1 (57-200)||(6512956-6513099)
chr1 (59-185)||(6521552-6521678)
chr1 (66-185)||(6517364-6517483)
chr1 (55-185)||(6507053-6507183)
chr1 (121-203)||(6500290-6500372)
chr1 (118-185)||(47777870-47777937)
chr1 (61-167)||(6523572-6523678)
chr1 (111-204)||(47772890-47772983)
[»] scaffold0341 (2 HSPs)
scaffold0341 (55-185)||(1078-1208)
scaffold0341 (55-185)||(8732-8862)
[»] chr5 (4 HSPs)
chr5 (16-200)||(28856548-28856732)
chr5 (16-200)||(28861825-28862009)
chr5 (16-200)||(28831352-28831536)
chr5 (108-205)||(27371774-27371871)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 47745879 - 47746070
Alignment:
Q  13 gtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47745879 gtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggc 47745978  T
Q  113 cataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47745979 cataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 47746070  T

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Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 47713296 - 47713487
Alignment:
Q  13 gtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggc 112  Q
    |||||||||||||||||||| ||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  47713296 gtgagaagaactcttgaatcattgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggc 47713395  T
Q  113 cataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713396 cataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 47713487  T

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Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 47760211 - 47760402
Alignment:
Q  13 gtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggc 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  47760211 gtgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggc 47760310  T
Q  113 cataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 204  Q
    ||||||| | |||||||||||||||||||||||  | ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  47760311 cataagaaatattgtagaaaccgtagttgatttctgcgttggaagttagattggacaaaacggtgttgaggttgttttgataggtgctattg 47760402  T

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Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 47718090 - 47718281
Alignment:
Q  13 gtgagaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggc 112  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||    
T  47718090 gtgagaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggc 47718189  T
Q  113 cataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 204  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  47718190 cataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattg 47718281  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 6512956 - 6513099
Alignment:
Q  57 gggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaa 156  Q
    |||||| ||||||||||| || |||||||| ||||||||||| || || |||   ||||||||| |||| ||||||||||||||||| |   ||||||||    
T  6512956 gggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaa 6513055  T
Q  157 gtgagattggataaaagggtgttgaggttgttttgataggtgct 200  Q
    |||||| |||||| ||||||||| ||||| || |||||||||||    
T  6513056 gtgagagtggatagaagggtgttaaggtttttgtgataggtgct 6513099  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 6521678 - 6521552
Alignment:
Q  59 gtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagt 158  Q
    |||| ||||||||||| || |||||||| ||||||||||| ||||| || |  ||||||||| |||| ||||||||||||||||| |   ||||||||||    
T  6521678 gtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagt 6521579  T
Q  159 gagattggataaaagggtgttgaggtt 185  Q
    |||| |||||||||||||||| |||||    
T  6521578 gagagtggataaaagggtgttaaggtt 6521552  T

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Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 6517364 - 6517483
Alignment:
Q  66 atctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattg 165  Q
    |||||||||||| |||||||| ||||||||||| ||  | |||  |||||||||| | || |||||||||||||||||||   |||||||||||||| ||    
T  6517364 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatg 6517463  T
Q  166 gataaaagggtgttgaggtt 185  Q
    |||||||||||||| |||||    
T  6517464 gataaaagggtgttaaggtt 6517483  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 6507053 - 6507183
Alignment:
Q  55 tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttgg 154  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| || || |||  |||||||||| |||| |||||||||||||| || |   ||||||    
T  6507053 tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttgg 6507152  T
Q  155 aagtgagattggataaaagggtgttgaggtt 185  Q
    |||||||| |||||| |||||| ||||||||    
T  6507153 aagtgagagtggatagaagggttttgaggtt 6507183  T

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Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 6500290 - 6500372
Alignment:
Q  121 aaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctatt 203  Q
    |||||||||||||||||||||||||  ||||||||||||||| | |||||||| ||||||||||| || | ||||||||||||    
T  6500290 aaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcataggtgctatt 6500372  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 47777937 - 47777870
Alignment:
Q  118 gagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggtt 185  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| |||||||||||    
T  47777937 gagaaattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtt 47777870  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 6523678 - 6523572
Alignment:
Q  61 ttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtga 160  Q
    |||||||| |||||||| || ||||| ||||||||||| |  || ||||  || |  ||||||||||||||||||||||||||||| |||||||||||||    
T  6523678 ttaacatcgcctctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtga 6523579  T
Q  161 gattgga 167  Q
    || ||||    
T  6523578 gagtgga 6523572  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 47772983 - 47772890
Alignment:
Q  111 gccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattg 204  Q
    |||||| ||||||||||||||||||||||||||||  || |  ||||  ||| |||| ||||| || || |||||||| | |||||||||||||    
T  47772983 gccatatgagaaattgtagaaaccgtagttgatttctgtatgagaagaaagactggacaaaagagttttaaggttgttgtcataggtgctattg 47772890  T

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Target: scaffold0341 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 1078 - 1208
Alignment:
Q  55 tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttgg 154  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| || || |||  |||||||||| |||| |||||||||||||| || |   ||||||    
T  1078 tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttgg 1177  T
Q  155 aagtgagattggataaaagggtgttgaggtt 185  Q
    |||||||| |||||| |||||| ||||||||    
T  1178 aagtgagagtggatagaagggttttgaggtt 1208  T

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Target: scaffold0341; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 8732 - 8862
Alignment:
Q  55 tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccataagagaaattgtagaaaccgtagttgatttgagtgttgg 154  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| || || |||  |||||||||| |||| |||||||||||||| || |   ||||||    
T  8732 tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttgg 8831  T
Q  155 aagtgagattggataaaagggtgttgaggtt 185  Q
    |||||||| |||||| |||||| ||||||||    
T  8832 aagtgagagtggatagaagggttttgaggtt 8862  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 28856548 - 28856732
Alignment:
Q  16 agaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccat 115  Q
    |||||||||||||||| ||| |||||||||||||||   |  || ||||||||||||||||| | ||| ||||||| |||||| |   | | || |||      
T  28856548 agaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcataatcctatggcgtatactttgttgttgtcttcgccga 28856647  T
Q  116 aagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgct 200  Q
    | ||||| ||||||||||||||| ||||||  ||||||||||| ||| | |||||||| ||||||||||| | |||||| |||||    
T  28856648 atgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgct 28856732  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 28861825 - 28862009
Alignment:
Q  16 agaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccat 115  Q
    |||||||||||||||| ||| |||||||||||||||   |  || ||||||||||||||||| | ||| ||||||| |||||| |   | | || |||      
T  28861825 agaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcataatcctatggcgtatactttgttgttgtcttcgccga 28861924  T
Q  116 aagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgct 200  Q
    | ||||| ||||||||||||||| ||||||  ||||||||||| ||| | |||||||| ||||||||||| | |||||| |||||    
T  28861925 atgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgct 28862009  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 28831352 - 28831536
Alignment:
Q  16 agaagaactcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtattttggccat 115  Q
    |||||||||||||||| ||| ||| ||| |||||||   |  || |||||||||||||| || | ||| ||||||| |||||| |   |   || ||| |    
T  28831352 agaagaactcttgaattgttaagataacggcggcaatcatttggattaacatctcctctacataatcctatggcgtatactttgttgttgcctttgccgt 28831451  T
Q  116 aagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgct 200  Q
    | ||||| ||||||||||||||| ||||||  ||||||||||| ||| | |||||||| ||||||||||| | |||||| |||||    
T  28831452 atgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggttttgttgatatgtgct 28831536  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 27371774 - 27371871
Alignment:
Q  108 ttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattga 205  Q
    ||||||||| ||||||||||| ||||||||||| ||||  |||| ||||| || | || ||| |||||| || |||||||| |  |||||||||||||    
T  27371774 ttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaaggttgttgtcgtaggtgctattga 27371871  T

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