View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_92 (Length: 211)
Name: NF9771_low_92
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 14025553 - 14025392
Alignment:
| Q |
33 |
cagttcgacatttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaattttt |
132 |
Q |
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||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14025553 |
cagtttgacctttcgaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcagcaacaattttt |
14025454 |
T |
|
| Q |
133 |
cagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
14025453 |
cagggaagattcctacttcaatgggatcacttgtagaactgcaagcattcctattgaggaac |
14025392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 13932626 - 13932459
Alignment:
| Q |
27 |
ttagctcagttcgacatttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaaca |
126 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13932626 |
ttagctcagtttgatgtttcaaataatcaattatctggacgaattccagactgttggagcaatttcaagtcattagtttatgtagatttgagccacaaca |
13932527 |
T |
|
| Q |
127 |
atttttcagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
13932526 |
atttttcagggaagattccaacttcaatgggatcacttgtaatactgcgagcattactattgaggaac |
13932459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 13862607 - 13862784
Alignment:
| Q |
17 |
agatgcaacgttagctcagttcgacatttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttg |
116 |
Q |
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||||| || |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13862607 |
agatgaaatgttagctcagtttgatgtttcaaataatcaattatctggacgaattccagactgttggagcaatttcaagtcattagtttatgtagatttg |
13862706 |
T |
|
| Q |
117 |
agcaacaacaatttttcagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
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|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13862707 |
agtcacaacaatttttcagggatgattccaacttcaatgggatcacttgtaaaactgcgagcattactattgaggaac |
13862784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 14015438 - 14015261
Alignment:
| Q |
17 |
agatgcaacgttagctcagttcgacatttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttg |
116 |
Q |
| |
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|||||||| ||||| ||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
14015438 |
agatgcaatgttaggccaggttgacctttcaaataatcaattatctggacaaattccaaactgttggagcaatttcaagtcattagcttatgttgatttg |
14015339 |
T |
|
| Q |
117 |
agcaacaacaatttttcagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14015338 |
agtcacaacaatttttcagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgacgaac |
14015261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 14110738 - 14110587
Alignment:
| Q |
43 |
tttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaatttttcagggaagat |
142 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |
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| T |
14110738 |
tttcaaataatcaattatctggaagaattccagactgttggagcaatttcaagtcattggtttatgttgatttgagccacaacaatttttcagggaagat |
14110639 |
T |
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| Q |
143 |
tcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
14110638 |
tccttcttcaatgggatcacttgttaatctgcaagcattactattgaggaac |
14110587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 13892797 - 13892958
Alignment:
| Q |
33 |
cagttcgacatttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaattttt |
132 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| | ||||||||| |||||||||||| |
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| T |
13892797 |
cagtttgacctttcaaataatcaattatctggacgagttccagactgttggaacaatttcaaggcattagtttatctcgatttgagccacaacaattttt |
13892896 |
T |
|
| Q |
133 |
cagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13892897 |
tagggaagattcctacttcaatgggatcacttgtagaactgcaagcattactattgaggaac |
13892958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 13912080 - 13911934
Alignment:
| Q |
48 |
aataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaatttttcagggaagattccta |
147 |
Q |
| |
|
||||||||||||||||||| ||||||| | || |||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||| | |
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| T |
13912080 |
aataatcaattatctggacaaattccagattgctggagcaatttcaagtcattagcttatctagatttgagccagaacaatttttcagggaagattccaa |
13911981 |
T |
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| Q |
148 |
cttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13911980 |
cttcaatgggatcacttgtagaactgcaagcattactattgaggaac |
13911934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 13875093 - 13875254
Alignment:
| Q |
33 |
cagttcgacatttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaattttt |
132 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||||||| | |||||||| |||||||| ||||||| |||||||||||||||| |||||||||||| |
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| T |
13875093 |
cagtttgacctttcaaataatcaattatctggaagaattccagattgttggagaaatttcaaatcattagcttatgtagatttgagccacaacaattttt |
13875192 |
T |
|
| Q |
133 |
cagggaagattcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||| |||||||||||||| | ||||||||| |
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|
| T |
13875193 |
cagggaaaattccttcttcaatgggatcactcgtagaactgcaagcattaatgttgaggaac |
13875254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 14047598 - 14047461
Alignment:
| Q |
57 |
ttatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaatttttcagggaagattcctacttcaatgg |
156 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
14047598 |
ttatctggacaaattccagactgttggagcaatttcaaggcattagcttatctagatttgagccacaacaatttttctgggaagattcctacttcaatgg |
14047499 |
T |
|
| Q |
157 |
gatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||| |
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|
| T |
14047498 |
gatcacttgtagaactgcgagcattaatattgaggaac |
14047461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 13472800 - 13472950
Alignment:
| Q |
43 |
tttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaatttttcagggaagat |
142 |
Q |
| |
|
|||| |||||| |||| || ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
13472800 |
tttcgaataataaattttcgggaggaattccaaattgttggagcaacttcaagtcattagtttatgtagatttgagtcacaacaatttttcctggaagat |
13472899 |
T |
|
| Q |
143 |
tcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaa |
193 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||||| |||||||||| |
|
|
| T |
13472900 |
tcctacttcaatgggatctcttgtagaacttcaagcattaatattgaggaa |
13472950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 14084929 - 14084778
Alignment:
| Q |
43 |
tttcaaataatcaattatctggacgaattccaaactgttggagcaatttcaagtcattagtttatgtagatttgagcaacaacaatttttcagggaagat |
142 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||| || | ||||| |
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| T |
14084929 |
tttcaaacaatcaattatctagacgaattccagactgttggagcaatttcaaggcattagcttatgtagatttgagccacaacaatttctcggcaaagat |
14084830 |
T |
|
| Q |
143 |
tcctacttcaatgggatcacttgtaaaactgcaagcattactattgaggaac |
194 |
Q |
| |
|
||||| |||| |||||||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
14084829 |
tcctatttcattgggatcacttgtagaacttcaagcattactgttaaggaac |
14084778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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