View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9771_low_93 (Length: 202)
Name: NF9771_low_93
Description: NF9771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9771_low_93 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 41942 - 42129
Alignment:
| Q |
15 |
tcaattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataat |
114 |
Q |
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|||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
41942 |
tcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataat |
42041 |
T |
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| Q |
115 |
ccatcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcct |
202 |
Q |
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| T |
42042 |
cgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcct |
42129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 35272 - 35459
Alignment:
| Q |
15 |
tcaattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataat |
114 |
Q |
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| T |
35272 |
tcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaaccataaagaatgaaggaaataat |
35371 |
T |
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| Q |
115 |
ccatcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcct |
202 |
Q |
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| T |
35372 |
cgatcatagaatataataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcct |
35459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 27445416 - 27445229
Alignment:
| Q |
15 |
tcaattagcagaattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaataat |
114 |
Q |
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|||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
27445416 |
tcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaaccataaagaatgaaggaaataat |
27445317 |
T |
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| Q |
115 |
ccatcatagaatctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcct |
202 |
Q |
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| T |
27445316 |
cgatcatagaatctaataaagtaatataacataacaacaaacacaggggcagcaagttagacatcttcgacaataaatatatcttcct |
27445229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 20909590 - 20909740
Alignment:
| Q |
26 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
124 |
Q |
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| T |
20909590 |
aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga |
20909688 |
T |
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| Q |
125 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagac |
176 |
Q |
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| T |
20909689 |
atatgataaagtaatataacataacaataaacacagtggcatcaagtaagac |
20909740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 20924038 - 20924188
Alignment:
| Q |
26 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
124 |
Q |
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| T |
20924038 |
aattcttattgtgcataggagcaaatatgatgttttggaatcatcaaataaagat-gcagattttactatacatatataaggaaaataattaatcataga |
20924136 |
T |
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| Q |
125 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagac |
176 |
Q |
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| T |
20924137 |
atatgataaagtaatataacataacaataaacacagtggcatcaagtaagac |
20924188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 42312704 - 42312880
Alignment:
| Q |
26 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
124 |
Q |
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||||||||||| |||||||||| || |||| |||||||||| ||||| ||| || ||||||||||| ||| | | | ||||||| |||| |||||||| |
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| T |
42312704 |
aattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaagat-gcagatttaactatacatatataaggaaaataattaatcataga |
42312802 |
T |
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| Q |
125 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcct |
202 |
Q |
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|| | |||||||||||||| ||||||| |||||| |||||||||| |||| | ||||| ||| ||| |||||||| |
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| T |
42312803 |
atatgataaagtaatataaaataacaatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcct |
42312880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 41326488 - 41326660
Alignment:
| Q |
26 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaaagaaggaaa-taatccatcataga |
124 |
Q |
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||||||||||| |||||||||| |||||| |||||||||| ||||| ||| || |||||||| | ||| | | | ||||||| |||| |||||||| |
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| T |
41326488 |
aattcttattgtgcataggagc---aatgatgttttggaatcatcaaataaagat-gcagatttt-ctatacatatataaggaaaataattaatcataga |
41326582 |
T |
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| Q |
125 |
atctaataaagtaatataacataacaacagacacagaggcatcaagttagacatattcgacaacaaagatatcttcct |
202 |
Q |
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|| | |||||||||||||||||||||| | |||||| |||||||||| |||| | ||||| ||| ||| |||||||| |
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| T |
41326583 |
atatgataaagtaatataacataacaataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcct |
41326660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 11504770 - 11504645
Alignment:
| Q |
26 |
aattcttattgcgcataggagcgaaaatgatattttggaatcctcaaacaaaaattgcagatttaacaataaagaa-agaaggaaataatccatcataga |
124 |
Q |
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||||||||||| ||||||||| || || || |||| ||||| ||||| | | |||||||||||||| ||||| || | ||||||||||| |||| ||| |
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| T |
11504770 |
aattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaactataaaaaatataaggaaataattaatca-aga |
11504672 |
T |
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| Q |
125 |
atctaataaagtaatataacataacaa |
151 |
Q |
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|| | |||||||||| ||||||||||| |
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| T |
11504671 |
atatgataaagtaatctaacataacaa |
11504645 |
T |
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