View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_12 (Length: 435)
Name: NF9772_high_12
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 12801477 - 12801898
Alignment:
| Q |
1 |
aaaaccatcatgttgttgatgatgatgagattcacttatgttgttgaattgatcatgcattgtgttgttaccattggtatttggaaagaagcttaggtta |
100 |
Q |
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| T |
12801477 |
aaaaccttcatgatgttgatgatgatgagattcacttatgttgttgaattgatcatgcattgtgttgttaccattggtatttggaaagaagcttaggtta |
12801576 |
T |
|
| Q |
101 |
aaaggcgataccgatgaagaagttgtgttgttattggtatttccttgaagatcgggaagttgcatgagaccatgatgaagatgaagttgtttgtttgaga |
200 |
Q |
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| T |
12801577 |
aaaggcgataccgacgaagaagttgtgttgttattggtatttccttgaagatcaggaagttgcatgagaccatgatgaagatgaagttgtttgtttgaga |
12801676 |
T |
|
| Q |
201 |
attgtccttgatgaaggtcttgttggaaagtttgatttggatcagtgatgaagaaaggtgaggaagacattga------ttgttgttgttgaccaaatga |
294 |
Q |
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| T |
12801677 |
attgtccttgatgaaggtcttgttggaaagtttgatttggatcagtgatgaagaaaggtgaggaagacattgattgttgttgttgttgttgaccaaatga |
12801776 |
T |
|
| Q |
295 |
tgatgatgaagattgatgtaaaggtgagattaaatgatgttcatattttggtgtacaaggaatgttacctaggcttaatatgttgttgtttgtggctcct |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12801777 |
tgatgatgaagattgatgtaaaggtgagattaaatgatgttcatattttggtgtacaaggaatgttacctaggcttaatatgttgttgtttgtggctcct |
12801876 |
T |
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| Q |
395 |
tgttgggtgcttatttgggata |
416 |
Q |
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|||||||||||||||||||||| |
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| T |
12801877 |
tgttgggtgcttatttgggata |
12801898 |
T |
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