View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_19 (Length: 406)
Name: NF9772_high_19
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 11025656 - 11025259
Alignment:
| Q |
1 |
ctcgtgtttggtcgatgtgcaaaaaattagaagacccatcgagggcaggtatatgtttcaaaacaatattaccaaaagcattgaccactcctaaattcaa |
100 |
Q |
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| T |
11025656 |
ctcgtgtttggtcgatgtgcaaaaaattagaagacccatcgagggcaggtatatgtttcaaaacaatattaccgaaagcattgaccactcctaaattcaa |
11025557 |
T |
|
| Q |
101 |
catatacaaagcccttgaggttgagactcaagcagcaagtgtacaaatcaataaaacgttagctatcattacatctctgatacctaaatatgcaaacaac |
200 |
Q |
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| T |
11025556 |
catatacaaagcccttgaggttgagactcaagcagcaagtgtacaaatcaataaaacgttagctatcattacatctctgatacctaaatatgcaaacaac |
11025457 |
T |
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| Q |
201 |
gcagacgtaagtggatcacttgattgttgcaagcaacaatatgaaatgatgcccgattctataaccaatgccgttgcggccctcgctgtgcgcaatgctc |
300 |
Q |
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| T |
11025456 |
gcagacgtaagtggatcacttgattgttgcaagcaacaatatgaaatgatgcctgattctataaccaatgccgttgcggccctcgctgtgcgcaatgctc |
11025357 |
T |
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| Q |
301 |
aagaagtaaatgcccaatttagcgcgattctttcataccatacctcttgtgtagatacttttgctgagagtactgattatcctgttgcaccctttgct |
398 |
Q |
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| T |
11025356 |
aagaagtaaatgctcaatttagcgggattctttcataccatacctcttgtgtagatacttttgctgagagtaatgattatcctgttgcaccctttgct |
11025259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 10891432 - 10891535
Alignment:
| Q |
54 |
tgtttcaaaacaatattaccaaaagcattgaccactcctaaattcaacatatacaaagcccttgaggttgagactcaagcagcaagtgtacaaatcaata |
153 |
Q |
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|||| ||| |||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||| | ||||| || |||||||| |
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| T |
10891432 |
tgttacaatacaatattaccaaaagcagagagcgctcctaaattcaacatatacacagcccttgaggttgagactcaagaaacaagtataagaatcaata |
10891531 |
T |
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| Q |
154 |
aaac |
157 |
Q |
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|||| |
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| T |
10891532 |
aaac |
10891535 |
T |
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