View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_23 (Length: 383)
Name: NF9772_high_23
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 51670401 - 51670045
Alignment:
| Q |
11 |
cagagaatttatgactcaagcatgcgggtgagttcgacgaaatcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatcagt |
110 |
Q |
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| T |
51670401 |
cagagaatttatgactcaagcatgcgggtgagttcgacaaaatcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatcagt |
51670302 |
T |
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| Q |
111 |
gccacgcaaggatttcactcaccgtttatccaaacatgcactatattttcacaaagcagaaactaacttgcctgaattgcattatgtgcgagatatttct |
210 |
Q |
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| T |
51670301 |
gccacgcaaggatttcactcaccgtttatccaaacatgcactatattttcacaaagcagaaactaacttgcctgaattgcattatgtgcgagatatttct |
51670202 |
T |
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| Q |
211 |
gcctactaccactgaagctgacatcaattcgatcccaaatcactgttgttaggcctctgatcatttcctctgcgagtattgtcatcactcatcagttata |
310 |
Q |
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| T |
51670201 |
gcctactaccactgaagctgacatcaattcgatcccaactcactgttgttaggcctctgatcatttcctctgcgagtattgtcatcactcatcagttata |
51670102 |
T |
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| Q |
311 |
aattttagattcaaaatacaaataatcaattctccatcttcaactagagacagaaac |
367 |
Q |
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| T |
51670101 |
aattttagattcaaaatacaaataatcaattctccatcttcaactagagacagaaac |
51670045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 19390404 - 19390474
Alignment:
| Q |
38 |
gtgagttcgacgaaatcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatca |
108 |
Q |
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| T |
19390404 |
gtgagttcgaagaaatcacagtagcaccgtgattttgttgaagcttcaaattgttgcttttgataaaatca |
19390474 |
T |
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