View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_24 (Length: 380)
Name: NF9772_high_24
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 40575007 - 40574636
Alignment:
| Q |
6 |
agaagcagagacaacaagcaaaccttttttgtgattaagattccatgaaaatctttagtacagacacagagcggttatctctaaattagatctcaatgac |
105 |
Q |
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| T |
40575007 |
agaagcatagacaacaagcaaaccttttttgtgattaagattccatgaaaatctttagtacagacacagagcagttatctctaaattagatctcaatgac |
40574908 |
T |
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| Q |
106 |
aaagctatttaaaaaaccaatttatttcgtaattaacctttccagtgggtacacttgaaacaacaagcttaaccattcccattgtttaatatcataccag |
205 |
Q |
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| T |
40574907 |
aaagctatttaaaaaaccaatttatttcgtaattaagctttccagtgggtacacttgaaacaacaagcttaaccattcccattgtttaacatcataccag |
40574808 |
T |
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| Q |
206 |
atatataacatcatacaagtacaagaatattcattatat--------------tttgggaaaattaaagagggaaagaaagaaatgcatatacccttgtg |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40574807 |
atatataacatcatacaagtacaagaatattcattatattttgtcttgacggttttgggaaaattaaagagggaaagaaagaaatgcatatacccttgtg |
40574708 |
T |
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| Q |
292 |
cacgcataagggggtcctcaaaggaagcatctggggcatagatttcaaaatcgcgagcagtggcacatgatc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40574707 |
cacgcataagggggtcctcaaaggaagcatctggggcatagatttcaaaatcgcgagcagtggcacatgatc |
40574636 |
T |
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