View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_34 (Length: 334)
Name: NF9772_high_34
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 12533254 - 12533577
Alignment:
| Q |
1 |
tttcataatttatttggatctctgtttcttcgtctcctcttattccatgtacctactatgggagaaatgatagcaatgttgaaggtaaaacatatcacgt |
100 |
Q |
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| T |
12533254 |
tttcataatttatttggatctctgtttcttcgtctcctcttattccatgtacctactatgggagaaatgatagcaatgttgaagataaaacatatcacgt |
12533353 |
T |
|
| Q |
101 |
ttgaagtgcattagcattggttcctcaattttgcatttgaggctgaaattgaataatttcgcatcatatattatttgcaggttttcttgttaatcaattg |
200 |
Q |
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| T |
12533354 |
ttgaagtgcattagcactggttcctcaattttgcatttgaggctgaaattgaataattttgcataatatattatttgcatgttttcttgttaatcaattg |
12533453 |
T |
|
| Q |
201 |
cttttgttttttactctttattaaatcaagccacaatgacacattgactttgatcttcaatttctggtcctcttcgagagttgctagaaaaggtatgatc |
300 |
Q |
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| T |
12533454 |
cttttgttttttactctttattaaatcaagccacaatgacacattgactttgatcttcaatttctggtcctctttgagagttgctagaaaaggtatgatc |
12533553 |
T |
|
| Q |
301 |
tacatgagccttcttctttctgtg |
324 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
12533554 |
tacacgagccttcttctttctgtg |
12533577 |
T |
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