View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_high_35 (Length: 321)

Name: NF9772_high_35
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_high_35
NF9772_high_35
[»] chr8 (9 HSPs)
chr8 (139-308)||(36536024-36536193)
chr8 (1-69)||(36535925-36535993)
chr8 (1-69)||(5567496-5567564)
chr8 (1-69)||(25249076-25249144)
chr8 (1-69)||(30224300-30224368)
chr8 (2-69)||(3379208-3379275)
chr8 (16-69)||(6428810-6428863)
chr8 (1-69)||(3375517-3375584)
chr8 (2-69)||(31032097-31032164)
[»] chr4 (9 HSPs)
chr4 (1-69)||(18656178-18656246)
chr4 (1-69)||(7040431-7040499)
chr4 (1-69)||(23564768-23564836)
chr4 (8-69)||(23566449-23566510)
chr4 (12-69)||(3529251-3529308)
chr4 (16-69)||(52518829-52518882)
chr4 (16-69)||(52520671-52520724)
chr4 (1-69)||(54296498-54296567)
chr4 (12-68)||(23985845-23985901)
[»] chr3 (3 HSPs)
chr3 (1-69)||(1140071-1140139)
chr3 (2-69)||(6789690-6789757)
chr3 (1-69)||(17402875-17402944)
[»] scaffold0057 (1 HSPs)
scaffold0057 (2-69)||(58856-58923)
[»] chr6 (7 HSPs)
chr6 (2-68)||(1088747-1088813)
chr6 (1-69)||(19645393-19645461)
chr6 (1-69)||(5376947-5377016)
chr6 (1-69)||(5378802-5378871)
chr6 (1-37)||(15149131-15149167)
chr6 (17-69)||(15866650-15866702)
chr6 (17-69)||(15868462-15868514)
[»] chr7 (8 HSPs)
chr7 (1-69)||(44963233-44963301)
chr7 (2-69)||(4895654-4895722)
chr7 (16-69)||(28124696-28124749)
chr7 (16-69)||(28126523-28126576)
chr7 (1-69)||(20046588-20046658)
chr7 (1-38)||(25471864-25471901)
chr7 (1-38)||(28014366-28014403)
chr7 (17-69)||(37405559-37405611)
[»] chr2 (2 HSPs)
chr2 (1-69)||(29758190-29758258)
chr2 (1-38)||(8759157-8759194)
[»] chr1 (5 HSPs)
chr1 (3-69)||(17449381-17449446)
chr1 (16-69)||(16808687-16808740)
chr1 (17-69)||(9312099-9312151)
chr1 (17-69)||(3282871-3282923)
chr1 (17-69)||(3284572-3284624)
[»] chr5 (2 HSPs)
chr5 (1-38)||(25076208-25076245)
chr5 (1-38)||(25134177-25134214)
[»] scaffold0251 (1 HSPs)
scaffold0251 (17-69)||(6296-6348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-29)||(39254-39282)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 36536024 - 36536193
Alignment:
Q  139 tactaactctagtcgaactattttaacacatgcaactatagagaacttacacaatcattgtcaaaggattcacacataataaactaaacaagaaagtctt 238  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36536024 tactaactctagccgaactattttaacacatgcaactatagagaacttacacaatcattgtcaaaggattcacacataataaactaaacaagaaagtctt 36536123  T
Q  239 attcaatcttaagccctcagctcccaccataatccttttgttacagttaatgcttaatttgttgatattg 308  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  36536124 attcaatcttaagccctcagctcccaccataatccttatgttacagttaatgcttaattcgttgatattg 36536193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36535925 - 36535993
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36535925 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctatatatagagattagtttgag 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5567564 - 5567496
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  5567564 aaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25249144 - 25249076
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  25249144 aaatgaatagattgataaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30224368 - 30224300
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  30224368 aaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 3379208 - 3379275
Alignment:
Q  2 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||| ||||||||||||||||| ||| || ||  |||||||||||||||||||    
T  3379208 aatgaatagattgataaaaaatgatgaatgagtacaatagttttccttaatatagagattagtttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 6428863 - 6428810
Alignment:
Q  16 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  6428863 taaaagatgatgaatgattacaatagtgttcctatatatagagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3375517 - 3375584
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||| ||||||| ||||||| |||||| ||  || ||| |||||||||||||||||||    
T  3375517 aaatgaatagattga-aaaagataatgaatgggtacaatagagttcctatatatagagattagtttgag 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 31032097 - 31032164
Alignment:
Q  2 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||||||||||| ||||||||||  |  | | || ||| |||||||||||||||||||    
T  31032097 aatgaatagattgataaaagatcatgaatgagtgtagtaatgttcctatatatagagattagtttgag 31032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18656246 - 18656178
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  18656246 aaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7040499 - 7040431
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  7040499 aaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23564768 - 23564836
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  23564768 aaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 23566449 - 23566510
Alignment:
Q  8 tagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  23566449 tagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 3529251 - 3529308
Alignment:
Q  12 ttgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 52518882 - 52518829
Alignment:
Q  16 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||| ||||||||||||| || ||| |||||||||||||||||||    
T  52518882 taaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 52520724 - 52520671
Alignment:
Q  16 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  52520724 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 54296567 - 54296498
Alignment:
Q  1 aaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||| ||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  54296567 aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 23985901 - 23985845
Alignment:
Q  12 ttgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttga 68  Q
    ||||||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||    
T  23985901 ttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtttga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1140139 - 1140071
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  1140139 aaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 6789757 - 6789690
Alignment:
Q  2 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||| |||||||  ||||||||||||| |||||| ||| |||||||||||||||||||    
T  6789757 aatgaatagattgaaaaaagatagtgaatgagtacaatagtattcctatatatagagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17402875 - 17402944
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 69  Q
    |||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  17402875 aaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 17402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 58923 - 58856
Alignment:
Q  2 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  58923 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 1088747 - 1088813
Alignment:
Q  2 aatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttga 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||    
T  1088747 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 19645393 - 19645461
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||| |||||||||||||||||| |||||||||||||| ||| ||  || |||||||||||||||||||    
T  19645393 aaataaatagattgataaaagataatgaatgagtacaatagtgttcttatatatagagattagtttgag 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5377016 - 5376947
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 69  Q
    |||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  5377016 aaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5378871 - 5378802
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 69  Q
    |||||||||||||||||||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  5378871 aaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15149131 - 15149167
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtaca 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15149131 aaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 15866702 - 15866650
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgag 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 15868514 - 15868462
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44963301 - 44963233
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||| ||||||    
T  44963301 aaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattaatttgag 44963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 4895722 - 4895654
Alignment:
Q  2 aatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||| |||||| |||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  4895722 aatgaatatattgattaaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 28124696 - 28124749
Alignment:
Q  16 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  28124696 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 28126523 - 28126576
Alignment:
Q  16 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  28126523 taaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20046588 - 20046658
Alignment:
Q  1 aaatgaatagattgat-aaaagatgatgaatgagtacaacagtattgctacatat-agagattagtttgag 69  Q
    |||||||||||||||| |||||||  ||||||||||||| ||| || ||| |||| |||||||||||||||    
T  20046588 aaatgaatagattgataaaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 20046658  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25471864 - 25471901
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaa 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  25471864 aaatgaatagattgataaaagatgaataatgagtacaa 25471901  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28014366 - 28014403
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaa 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  28014366 aaatgaatagattgataaaagatgaataatgagtacaa 28014403  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 37405559 - 37405611
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 37405611  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29758258 - 29758190
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  29758258 aaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 29758190  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8759157 - 8759194
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaa 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8759157 aaatgaacagattgataaaagatgatgaatgagtacaa 8759194  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 17449446 - 17449381
Alignment:
Q  3 atgaatagattgataaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  17449446 atgaatagattga-aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 17449381  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 16808687 - 16808740
Alignment:
Q  16 taaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||||||||||||||||||| ||| ||  || |||||||||||||||||||    
T  16808687 taaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 9312151 - 9312099
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    ||||||| |||||||||||||| ||| || ||| |||||||||||||||||||    
T  9312151 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 9312099  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 3282923 - 3282871
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3282871  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 3284624 - 3284572
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3284572  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25076208 - 25076245
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaa 38  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  25076208 aaatgaatatattgataaaagatgatgaaagagtacaa 25076245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25134177 - 25134214
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaatgagtacaa 38  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  25134177 aaatgaatatattgataaaagatgatgaaagagtacaa 25134214  T

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Target: scaffold0251 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 6348 - 6296
Alignment:
Q  17 aaaagatgatgaatgagtacaacagtattgctacatatagagattagtttgag 69  Q
    |||||||  ||||||||||||| ||| || ||| |||||||||||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 6296  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39282 - 39254
Alignment:
Q  1 aaatgaatagattgataaaagatgatgaa 29  Q
    |||||||||||||||||||||||||||||    
T  39282 aaatgaatagattgataaaagatgatgaa 39254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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