View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_38 (Length: 304)
Name: NF9772_high_38
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 33397424 - 33397708
Alignment:
| Q |
1 |
cttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgtcattggtgattattttagggtaactgatatccaattgt |
100 |
Q |
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| T |
33397424 |
cttgcggagttttgaaagcttttgagtgagaagcttcaaagcattattataattgtcactgtcattggtgattattttagggtaactgatatccaattgt |
33397523 |
T |
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| Q |
101 |
tggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaaggttgatttagtgtttt |
200 |
Q |
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| T |
33397524 |
tggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggtcaaggttgatttagtgtttt |
33397623 |
T |
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| Q |
201 |
tgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaacg |
285 |
Q |
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| T |
33397624 |
tgagaatagtttgcaatcctaacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaacg |
33397708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36876501 - 36876698
Alignment:
| Q |
1 |
cttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgtc------att---ggtgattattttagggtaactgata |
91 |
Q |
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| T |
36876501 |
cttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtcagtgtcgtagccattaccggttattgttttggggaaactgata |
36876600 |
T |
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| Q |
92 |
tccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaaggttga |
189 |
Q |
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| T |
36876601 |
tccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaatgttggaacatgtgagagaggtcaaggttga |
36876698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 27004866 - 27004670
Alignment:
| Q |
75 |
ttttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgag |
174 |
Q |
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| T |
27004866 |
ttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaagccatattggaacatgtgag |
27004767 |
T |
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| Q |
175 |
agaggttaaggttgatt------tagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgaga |
265 |
Q |
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| T |
27004766 |
agaggtcaaggtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttggagaggttgagggatgtgaga |
27004670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 33708024 - 33707921
Alignment:
| Q |
161 |
ttggaacaagtgagagaggttaaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatg |
260 |
Q |
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| T |
33708024 |
ttggaacaaatgagggaggtcaaggttgatttattatttttgagaagaactcgcaaccctaactcggggaaggtggggtggttggagaggttgagggaag |
33707925 |
T |
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| Q |
261 |
tgag |
264 |
Q |
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|||| |
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| T |
33707924 |
tgag |
33707921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 37579803 - 37579734
Alignment:
| Q |
194 |
gtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtga |
263 |
Q |
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| T |
37579803 |
gtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttggagaggttgagagaagtga |
37579734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 27004939 - 27004896
Alignment:
| Q |
2 |
ttgcggagttttgaaagcttttgagtgagaagcttcagagcatt |
45 |
Q |
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| T |
27004939 |
ttgcggagttttgaaagcttttgagtaagaagctgtagagcatt |
27004896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 33713837 - 33713755
Alignment:
| Q |
182 |
aaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgag |
264 |
Q |
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| T |
33713837 |
aaggttgatttattatttttgagaagagctcgcaaccctaactcagggaaggtggggtggttggagaggttgagggaagtgag |
33713755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37579999 - 37579955
Alignment:
| Q |
1 |
cttgcggagttttgaaagcttttgagtgagaagcttcagagcatt |
45 |
Q |
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| T |
37579999 |
cttgcagagttttgaaagcttttgagtaagaacctttagagcatt |
37579955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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