View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_41 (Length: 278)
Name: NF9772_high_41
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 17518271 - 17518017
Alignment:
| Q |
21 |
acaacagcaattgcggccgcaattgtctgaattctgctgcattattaaggtttgcagcataaccgcaatcgcaaccacagttaaacaactgtgatggaaa |
120 |
Q |
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| T |
17518271 |
acaacagcaattgcggccgcaactgtctgaattctgctgcattatcaaggtttgcagcataaccgcaatcgcaaccacagttaaacaactgtgatggaaa |
17518172 |
T |
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| Q |
121 |
caaaaatgctagtggctcaaataggaaaagcatgaaaataaacttacaacgaatccaaggtagaacactttgtccataatcacggaaaaaccatgcaaca |
220 |
Q |
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| T |
17518171 |
caaaaatgctagtggctcaaataggaaaagcatgaaaataaacttacaacgaatccaaggtagaacactttgtccataatcacggaaaaaccatgcaaca |
17518072 |
T |
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| Q |
221 |
agattcattatcaagaatataatgccaaaataataacgggcatgaagtgatttcg |
275 |
Q |
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| T |
17518071 |
agattcattatcaagaatataatgccaaaacaataacgggcatgaagtgatttcg |
17518017 |
T |
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