View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9772_high_42 (Length: 276)
Name: NF9772_high_42
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_42 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 44377610 - 44377885
Alignment:
| Q |
1 |
agctgcaccgtcgtctgagacatagcacgccactttttccaccggataatctactgctaggatggacagaactgtgtttgcagttataagaggaggctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377610 |
agctgcaccgtcgtctgagacatagcacgccactttttccaccggataatctactgctaggatggacagaactgtgtttgcagttataagaggaggctct |
44377709 |
T |
|
| Q |
101 |
ttcataggatccacagtactaacaaatatgtcaatatcagataattcacacggctttccttctttctcgtacctcagtgataaacgatcaaggtatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377710 |
ttcataggatccacagtactaacaaatatgtcaatatcggataattcacacggctttccttctttctcgtacctcagtgataaacgatcaaggtatgttt |
44377809 |
T |
|
| Q |
201 |
ctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44377810 |
ctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactga |
44377885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 38721345 - 38721451
Alignment:
| Q |
170 |
tacctcagtgataaacgatcaaggtatgtttctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacata |
269 |
Q |
| |
|
||||||||||| | ||| |||||||| ||||||||| | ||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
38721345 |
tacctcagtgaaagacggtcaaggtacgtttctcgcgttattgggtaccattttggaaactgatccattatccaagatacagcaaaccatatttcacata |
38721444 |
T |
|
| Q |
270 |
ttactga |
276 |
Q |
| |
|
| ||||| |
|
|
| T |
38721445 |
tgactga |
38721451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 38721092 - 38721198
Alignment:
| Q |
20 |
acatagcacgccactttttccaccggataatctactgctaggatggacagaactgtgtttgcagttataagaggaggctctttcataggatccacagtac |
119 |
Q |
| |
|
|||||||| || ||||| || || ||||| || || || ||||| || ||||| |||||||| || || || ||||| |||||||||||||| ||||||| |
|
|
| T |
38721092 |
acatagcatgcaactttatcaactggatagtcaacagcaaggatagatagaacagtgtttgctgtgatcagtggaggttctttcataggatcaacagtac |
38721191 |
T |
|
| Q |
120 |
taacaaa |
126 |
Q |
| |
|
| ||||| |
|
|
| T |
38721192 |
tgacaaa |
38721198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 54383968 - 54384068
Alignment:
| Q |
170 |
tacctcagtgataaacgatcaaggtatgtttctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacata |
269 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||||| |||| ||| ||||||| || |||||||| | |||||||||| ||||||||| |||||||||| |
|
|
| T |
54383968 |
tacctgagtgaaagacggtcaaggtatgtttctctatcaataggataccatttggggaactgatcaaggatccatgatatagcaaaccagatttcacata |
54384067 |
T |
|
| Q |
270 |
t |
270 |
Q |
| |
|
| |
|
|
| T |
54384068 |
t |
54384068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 49592507 - 49592571
Alignment:
| Q |
212 |
ggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | ||||||||||| ||||| || ||||| |
|
|
| T |
49592507 |
ggagaccattttggaaactgatccaaaatccaggaaaatgcaaaccaaatctcacagataactga |
49592571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 15170699 - 15170639
Alignment:
| Q |
216 |
accattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactga |
276 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
15170699 |
accattttggaaactgatcaagtatccatgataatgcaaaccatatttcacatattactga |
15170639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 44633009 - 44632939
Alignment:
| Q |
32 |
actttttccaccggataatctactgctaggatggacagaactgtgtttgcagttataagaggaggctcttt |
102 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || | || ||||||||||||| |||||| |||||||| |
|
|
| T |
44633009 |
actttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaagaggtggctcttt |
44632939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University