View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_high_46 (Length: 254)

Name: NF9772_high_46
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_high_46
NF9772_high_46
[»] chr1 (34 HSPs)
chr1 (1-240)||(32359082-32359321)
chr1 (71-197)||(7274589-7274715)
chr1 (38-199)||(32602740-32602901)
chr1 (37-214)||(31117702-31117881)
chr1 (71-214)||(21516661-21516804)
chr1 (83-199)||(42747548-42747664)
chr1 (37-197)||(37131478-37131640)
chr1 (82-199)||(35058532-35058649)
chr1 (37-117)||(20004000-20004080)
chr1 (50-177)||(22593626-22593754)
chr1 (71-147)||(20791972-20792048)
chr1 (37-136)||(35272591-35272689)
chr1 (72-142)||(1415734-1415804)
chr1 (86-142)||(5951867-5951923)
chr1 (37-162)||(7583413-7583544)
chr1 (71-142)||(35926674-35926745)
chr1 (71-201)||(7097744-7097873)
chr1 (71-193)||(28736208-28736330)
chr1 (73-125)||(46315642-46315694)
chr1 (81-127)||(47326546-47326592)
chr1 (81-158)||(23805410-23805487)
chr1 (81-125)||(11823677-11823721)
chr1 (81-125)||(28314816-28314860)
chr1 (81-120)||(25365858-25365897)
chr1 (50-117)||(30418427-30418494)
chr1 (54-117)||(38322103-38322166)
chr1 (74-192)||(52596278-52596397)
chr1 (73-139)||(15188583-15188649)
chr1 (110-199)||(7781198-7781285)
chr1 (81-125)||(12014735-12014779)
chr1 (73-105)||(15942491-15942523)
chr1 (81-141)||(36021062-36021122)
chr1 (81-125)||(38624161-38624205)
chr1 (81-125)||(39325704-39325748)
[»] chr4 (39 HSPs)
chr4 (37-201)||(52831394-52831558)
chr4 (37-212)||(24418212-24418387)
chr4 (71-199)||(24474043-24474171)
chr4 (71-198)||(17425685-17425812)
chr4 (37-157)||(31736116-31736235)
chr4 (82-213)||(23051682-23051813)
chr4 (72-191)||(39276304-39276423)
chr4 (50-149)||(55723210-55723309)
chr4 (37-115)||(47789476-47789554)
chr4 (32-105)||(20988782-20988855)
chr4 (71-156)||(21501601-21501686)
chr4 (50-137)||(41963371-41963458)
chr4 (83-153)||(2733406-2733475)
chr4 (71-153)||(52986480-52986562)
chr4 (71-140)||(3535168-3535237)
chr4 (50-142)||(26552175-26552267)
chr4 (50-135)||(44555692-44555777)
chr4 (94-198)||(25885924-25886024)
chr4 (71-156)||(13615223-13615308)
chr4 (81-125)||(19801019-19801063)
chr4 (81-125)||(19801825-19801869)
chr4 (81-125)||(36181332-36181376)
chr4 (81-125)||(37114396-37114440)
chr4 (45-148)||(37713187-37713291)
chr4 (81-125)||(49335153-49335197)
chr4 (50-114)||(52327328-52327392)
chr4 (44-131)||(32474843-32474930)
chr4 (85-194)||(1162163-1162272)
chr4 (81-122)||(25687082-25687123)
chr4 (62-194)||(26026623-26026756)
chr4 (50-99)||(41758558-41758607)
chr4 (169-198)||(47789588-47789617)
chr4 (81-122)||(54683693-54683734)
chr4 (81-125)||(6287930-6287974)
chr4 (83-115)||(17896025-17896057)
chr4 (81-125)||(32012640-32012684)
chr4 (81-125)||(33984181-33984225)
chr4 (81-125)||(53284100-53284144)
chr4 (81-125)||(55001706-55001750)
[»] chr5 (39 HSPs)
chr5 (37-214)||(9004748-9004925)
chr5 (37-139)||(1621523-1621625)
chr5 (82-199)||(34639944-34640061)
chr5 (50-142)||(16869932-16870024)
chr5 (50-193)||(22028655-22028798)
chr5 (37-199)||(32882662-32882831)
chr5 (45-114)||(34640063-34640132)
chr5 (50-193)||(28363381-28363524)
chr5 (71-138)||(6462402-6462469)
chr5 (37-156)||(32826741-32826860)
chr5 (71-201)||(41892911-41893041)
chr5 (71-115)||(31812082-31812126)
chr5 (71-142)||(4283098-4283169)
chr5 (71-117)||(13838879-13838925)
chr5 (45-122)||(31677162-31677240)
chr5 (71-181)||(34639744-34639854)
chr5 (81-125)||(6789576-6789620)
chr5 (81-125)||(15498738-15498782)
chr5 (73-125)||(16218262-16218314)
chr5 (81-125)||(24171458-24171502)
chr5 (81-125)||(29525283-29525327)
chr5 (81-125)||(36761155-36761199)
chr5 (81-125)||(37530707-37530751)
chr5 (81-125)||(41734231-41734275)
chr5 (81-125)||(42422902-42422946)
chr5 (81-125)||(42709404-42709448)
chr5 (50-193)||(2941874-2942016)
chr5 (76-115)||(11863386-11863425)
chr5 (62-121)||(15120889-15120948)
chr5 (83-125)||(13359445-13359487)
chr5 (71-141)||(17259450-17259520)
chr5 (81-125)||(10815156-10815200)
chr5 (167-199)||(11653834-11653866)
chr5 (81-125)||(12280874-12280918)
chr5 (81-125)||(12939844-12939888)
chr5 (81-125)||(12953794-12953838)
chr5 (129-197)||(18336380-18336447)
chr5 (81-125)||(23590732-23590776)
chr5 (50-138)||(34590181-34590269)
[»] chr2 (27 HSPs)
chr2 (50-237)||(40909816-40910003)
chr2 (50-237)||(44984320-44984507)
chr2 (71-148)||(31062936-31063013)
chr2 (82-139)||(12238594-12238651)
chr2 (45-138)||(42139387-42139479)
chr2 (50-138)||(44810061-44810149)
chr2 (71-142)||(27679071-27679142)
chr2 (50-105)||(15804440-15804495)
chr2 (71-193)||(44809871-44809992)
chr2 (33-104)||(42034452-42034523)
chr2 (81-125)||(1875995-1876039)
chr2 (81-125)||(7454625-7454669)
chr2 (81-125)||(8875766-8875810)
chr2 (81-125)||(12160876-12160920)
chr2 (81-125)||(14958213-14958257)
chr2 (81-125)||(34245339-34245383)
chr2 (81-125)||(38324331-38324375)
chr2 (75-142)||(35189302-35189369)
chr2 (82-125)||(42519807-42519850)
chr2 (45-118)||(10911593-10911666)
chr2 (84-173)||(38808956-38809045)
chr2 (81-125)||(5774186-5774230)
chr2 (81-125)||(16496578-16496622)
chr2 (81-125)||(30523702-30523746)
chr2 (81-125)||(36936035-36936079)
chr2 (81-125)||(39241123-39241167)
chr2 (81-125)||(44525949-44525993)
[»] chr8 (32 HSPs)
chr8 (64-199)||(28444776-28444911)
chr8 (71-199)||(41470027-41470155)
chr8 (82-193)||(38288897-38289008)
chr8 (47-156)||(13895934-13896050)
chr8 (71-175)||(18892296-18892400)
chr8 (58-182)||(25019620-25019744)
chr8 (71-122)||(37740624-37740675)
chr8 (71-197)||(14243110-14243236)
chr8 (85-149)||(13544129-13544193)
chr8 (85-149)||(13680280-13680344)
chr8 (71-139)||(32467773-32467840)
chr8 (71-199)||(43408488-43408615)
chr8 (50-139)||(3346223-3346312)
chr8 (32-77)||(12525138-12525183)
chr8 (81-125)||(14911858-14911902)
chr8 (81-125)||(25100177-25100221)
chr8 (81-125)||(25100339-25100383)
chr8 (82-122)||(35057264-35057304)
chr8 (81-125)||(36859321-36859365)
chr8 (81-125)||(40529594-40529638)
chr8 (81-125)||(43800731-43800775)
chr8 (71-138)||(24523835-24523902)
chr8 (71-142)||(27316672-27316743)
chr8 (75-117)||(2595231-2595273)
chr8 (81-199)||(14354543-14354661)
chr8 (71-117)||(29512807-29512852)
chr8 (110-199)||(13969985-13970072)
chr8 (82-139)||(35764593-35764650)
chr8 (81-125)||(20697468-20697512)
chr8 (50-134)||(29861347-29861430)
chr8 (50-118)||(36049660-36049728)
chr8 (81-125)||(45237755-45237799)
[»] chr3 (32 HSPs)
chr3 (32-199)||(32645687-32645853)
chr3 (71-181)||(43822487-43822597)
chr3 (37-199)||(37334436-37334598)
chr3 (50-193)||(37083794-37083938)
chr3 (37-175)||(32326120-32326258)
chr3 (71-175)||(9198195-9198299)
chr3 (71-197)||(38684772-38684898)
chr3 (50-125)||(32117833-32117908)
chr3 (37-136)||(32582458-32582557)
chr3 (81-136)||(44539130-44539185)
chr3 (71-156)||(32109499-32109584)
chr3 (51-117)||(20873186-20873252)
chr3 (72-125)||(8879457-8879510)
chr3 (81-125)||(12122843-12122887)
chr3 (37-107)||(2948883-2948953)
chr3 (71-156)||(1384162-1384247)
chr3 (37-122)||(33674505-33674589)
chr3 (81-125)||(2557864-2557908)
chr3 (81-125)||(34435937-34435981)
chr3 (81-125)||(41991646-41991690)
chr3 (81-125)||(54463418-54463462)
chr3 (83-122)||(9558824-9558863)
chr3 (71-122)||(11041987-11042038)
chr3 (82-141)||(13800054-13800113)
chr3 (82-125)||(36237929-36237972)
chr3 (81-120)||(55226393-55226432)
chr3 (37-79)||(13799995-13800037)
chr3 (81-122)||(12764767-12764808)
chr3 (110-199)||(44947255-44947342)
chr3 (81-125)||(30317906-30317950)
chr3 (71-135)||(36879054-36879118)
chr3 (81-125)||(52184789-52184833)
[»] scaffold0040 (1 HSPs)
scaffold0040 (37-175)||(49873-50011)
[»] chr7 (37 HSPs)
chr7 (39-204)||(883677-883842)
chr7 (39-204)||(1243006-1243171)
chr7 (38-199)||(3836882-3837046)
chr7 (75-163)||(25659420-25659508)
chr7 (61-188)||(28175581-28175708)
chr7 (83-193)||(18654709-18654819)
chr7 (83-139)||(44235513-44235569)
chr7 (82-193)||(18654096-18654206)
chr7 (83-125)||(44818814-44818856)
chr7 (45-105)||(87266-87326)
chr7 (50-118)||(2525172-2525239)
chr7 (95-199)||(12473526-12473630)
chr7 (50-142)||(15050826-15050918)
chr7 (81-125)||(27826802-27826846)
chr7 (81-125)||(29994178-29994222)
chr7 (81-125)||(42328985-42329029)
chr7 (60-120)||(42967762-42967822)
chr7 (81-125)||(46672599-46672643)
chr7 (82-153)||(34838459-34838530)
chr7 (81-122)||(25696129-25696170)
chr7 (76-141)||(30046310-30046374)
chr7 (81-122)||(46349846-46349887)
chr7 (81-121)||(4060449-4060489)
chr7 (45-113)||(13438420-13438488)
chr7 (82-142)||(15568751-15568811)
chr7 (110-154)||(19087268-19087312)
chr7 (131-199)||(24580971-24581039)
chr7 (81-125)||(28494238-28494282)
chr7 (81-125)||(28958084-28958128)
chr7 (81-125)||(31031856-31031900)
chr7 (81-117)||(33982277-33982313)
chr7 (85-125)||(42265239-42265279)
chr7 (81-125)||(42328126-42328170)
chr7 (81-117)||(43544858-43544894)
chr7 (81-125)||(46350798-46350842)
chr7 (81-125)||(46536215-46536259)
chr7 (81-125)||(46615641-46615685)
[»] chr6 (16 HSPs)
chr6 (50-199)||(5976572-5976720)
chr6 (37-151)||(1288292-1288407)
chr6 (72-142)||(3341104-3341174)
chr6 (50-107)||(27903901-27903958)
chr6 (50-106)||(9197214-9197270)
chr6 (81-125)||(12130574-12130618)
chr6 (38-122)||(17328693-17328777)
chr6 (81-125)||(21860327-21860371)
chr6 (81-125)||(24119201-24119245)
chr6 (50-105)||(724597-724652)
chr6 (82-125)||(25023418-25023461)
chr6 (33-68)||(33757725-33757760)
chr6 (81-135)||(16800436-16800490)
chr6 (81-139)||(17071804-17071862)
chr6 (83-125)||(20992229-20992271)
chr6 (81-125)||(20645751-20645795)
[»] scaffold0004 (1 HSPs)
scaffold0004 (37-118)||(339001-339081)
[»] scaffold0010 (1 HSPs)
scaffold0010 (50-142)||(166590-166680)
[»] scaffold0330 (1 HSPs)
scaffold0330 (81-125)||(7084-7128)
[»] scaffold0325 (1 HSPs)
scaffold0325 (81-125)||(18469-18513)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32359321 - 32359082
Alignment:
1 aaaaaatgtgcatttaattaatannnnnnnctaatcaagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatc 100  Q
    |||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
32359321 aaaaaatgtgcatttaattaatatttttttctaattaagattgtagggataaaattgagataaaaagtgctaagctataggttacttgaattagcttatc 32359222  T
101 aaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaa 200  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32359221 aaaaatcgctgtaagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaa 32359122  T
201 ccattagctcaaatccacgtctcactaaacagaccctttg 240  Q
    ||||||||||||||||||||||||| ||||||||||||||    
32359121 ccattagctcaaatccacgtctcaccaaacagaccctttg 32359082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 7274715 - 7274589
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    |||||||||  |||||||||||||||||||| |  || |||| |||||||||||||||| ||||||||||| ||||||||| ||||  |||||   ||||    
7274715 taagctataaactacttgaattagcttatcagaggccactatgagctcatgaaaataagttataagctcgtttaaaaatgatagttatgaaacaagtctt 7274616  T
171 ttttaatcatacgagcttataagctat 197  Q
    |||||||||||||||||||||||||||    
7274615 ttttaatcatacgagcttataagctat 7274589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 32602901 - 32602740
Alignment:
38 agattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagc 137  Q
    ||||||||||| ||||||  ||||||||| || ||||||||| |||| |||||||||||||||||| |||  ||||| | ||||||||||| ||||||||    
32602901 agattgtaggggtaaaatgaagataaaaattgataagctataagctatttgaattagcttatcaaatacctttataaacacatgaaaataaactataagc 32602802  T
138 tcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    |||||||||| ||| ||||   ||||  ||||||||||||||||  | |||||||| |||||    
32602801 tcgtgtaaaactgatagttagcaaacaaatcttttttaatcatataaacttataagttataa 32602740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 31117702 - 31117881
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctata-- 134  Q
    |||||||||||| ||||||||||||||||| || || |||||| ||||||||||||| |||||||||||  ||||||||||||| ||| |||| ||||      
31117702 aagattgtaggggtaaaattgagataaaaattgataggctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagttatatt 31117801  T
135 agctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccattagctcaaat 214  Q
    | || |||  ||||||||| || | |||| | ||||||| | ||||||||| |||||||| |||| |||| |||||||||    
31117802 aacttgtgagaaaatgacaattaccaaacaggtctttttcagtcatacgagattataagcaataagccataagctcaaat 31117881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 21516661 - 21516804
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| | ||||||| || |||||  ||||| |||||||||||||| ||| |||| |||||||||||| |||||||||| || | ||||   ||||    
21516661 taagctataagatacttgattttgcttaataaaaaacgctataagctcatcaaattaagttataagctcgtgaaaaaatgacaattaccaaacatgtctt 21516760  T
171 ttttaatcatacgagcttataagctataaaccattagctcaaat 214  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||    
21516761 ttttagtcatacgagcttataagctataagccataagctcaaat 21516804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 42747664 - 42747548
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatac 182  Q
    ||||||||||||||||| ||||| | |||||||||||| ||| ||||||||||||| |||   ||||||||||| |  || || ||| ||||||||||||    
42747664 tacttgaattagcttataaaaaaacactataagctcataaaattaagctataagcttgtgagtaaatgacagttacttaatgggtctattttaatcatac 42747565  T
183 gagcttataagctataa 199  Q
    |||||||||||||||||    
42747564 gagcttataagctataa 42747548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 37131478 - 37131640
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    |||||||||| | ||||||  || | ||||||| ||||||||| |||||||||||||||||||||||| | | | |||| ||||||||||||| | ||||    
37131478 aagattgtagtggtaaaatcaagttgaaaagtgataagctataagctacttgaattagcttatcaaaagctgttgtaagttcatgaaaataaggtctaag 37131577  T
137 ctcgtgtaaaaatgacagttgcgaaacggatctttttt--aatcatacgagcttataagctat 197  Q
    ||||||| |  |||| || | | |||||| ||||||||  |||||||||| ||||||||||||    
37131578 ctcgtgtgattatgatagctaccaaacgggtcttttttaaaatcatacgaacttataagctat 37131640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 35058649 - 35058532
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcata 181  Q
    |||||||||||||||||  |||||||||||||||| | | |||||||||||||||||||||   ||||||| ||| | |||||| || | |||| |||||    
35058649 ctacttgaattagcttactaaaaaccgctataagcccgtaaaaataagctataagctcgtgagcaaatgactgttaccaaacgggtcatctttagtcata 35058550  T
182 cgagcttataagctataa 199  Q
    |||||||||||| |||||    
35058549 cgagcttataagttataa 35058532  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 20004080 - 20004000
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    ||||||| |||  |||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||    
20004080 aagattgcaggagtaaaatcgagataaaaggtgataagctataagctacttgaattagcttatcaaaaaacgctataagct 20004000  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 22593626 - 22593754
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatc-aaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaa 148  Q
    |||||||  |||||||| || ||||||||| |||||||||||||||||||| |||||| |||||||||| || ||||||||||| | |||||||  |||     
22593626 taaaattaggataaaaaatgataagctataagctacttgaattagcttatcgaaaaactgctataagctgataaaaataagctacaggctcgtgagaaag 22593725  T
149 tgacagttgcgaaacggatcttttttaat 177  Q
    |||| ||| | |||| | |||||||||||    
22593726 tgacggttaccaaactggtcttttttaat 22593754  T

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Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 20791972 - 20792048
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaa 147  Q
    ||||||||| ||||||||||||||||||||||||||| |||| | ||||| |||||||| | |||| ||||||||||    
20791972 taagctataagctacttgaattagcttatcaaaaaccactatgaactcataaaaataagatgtaaggtcgtgtaaaa 20792048  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 35272591 - 35272689
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| | || |||||||||||||||| ||  ||||| ||| |||||| |||||||||||||||||   ||||||||||||| |||||||||||||||    
35272591 aagattgcatgggtaaaattgagataaaa-gttataagccataagctactggaattagcttatcaaaacaagctataagctcataaaaataagctataag 35272689  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 1415804 - 1415734
Alignment:
72 aagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    |||||| | ||||||||||||||||||||||||| ||||||||  | || |||||||||||||||||||||    
1415804 aagctacaagctacttgaattagcttatcaaaaaacgctataaattaataaaaataagctataagctcgtg 1415734  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 5951867 - 5951923
Alignment:
86 ttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||    
5951867 ttgaattagcttatctcaaaccgctataagctcataaaaataagctataagatcgtg 5951923  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 162
Target Start/End: Complemental strand, 7583544 - 7583413
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggct------acttgaattagcttatcaaaaaccgctataagctcatgaaaataagc 130  Q
    ||||||| |||||||||||||||||||||||||  ||| |||| |||      ||||||| |  ||||||||| | | | |||||||||| ||||||| |    
7583544 aagattgcagggataaaattgagataaaaagtgaaaagttataagcttaagctacttgaacttacttatcaaataacacaataagctcataaaaataaac 7583445  T
131 tataagctcgtgtaaaaatgacagttgcgaaa 162  Q
    ||||||||||||  |||||||||||| |||||    
7583444 tataagctcgtgagaaaatgacagttacgaaa 7583413  T

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Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 35926674 - 35926745
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||||||| ||||||||||| ||||||||||||| | ||| |||||  | |||||||||||||||||||||    
35926674 taagctataagctacttgaatcagcttatcaaaaaacactacaagctagtaaaaataagctataagctcgtg 35926745  T

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Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 7097744 - 7097873
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| | ||||||||||||||||| |||||     |||||||||| ||||||| |||||||||| ||  ||||||| |||| | ||| | ||| |    
7097744 taagctataagatacttgaattagcttattaaaaataatcataagctcat-aaaataacctataagctcatgagaaaatgatagttaccaaatgaatcgt 7097842  T
171 ttttaatcatacgagcttataagctataaac 201  Q
    ||||||| |||| || |||||||||||||||    
7097843 ttttaatgatacaagtttataagctataaac 7097873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 28736208 - 28736330
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| |||||||||||||||||||| ||||  |||||||| |  | |||||||||| |||||| ||| ||||||||| ||| | |  | | ||||    
28736208 taagctatacgctacttgaattagcttatctaaaaatgctataagttggtaaaaataagctgtaagcttgtgaaaaaatgacggttaccaggctggtctt 28736307  T
171 ttttaatcatacgagcttataag 193  Q
    ||||| ||| | |||||||||||    
28736308 ttttagtcaaatgagcttataag 28736330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 46315642 - 46315694
Alignment:
73 agctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
46315642 agctataagctacttgaaatagcttatcaaaaaacgttataagctcatgaaaa 46315694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 47326546 - 47326592
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaata 127  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||||    
47326546 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaata 47326592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 23805487 - 23805410
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgc 158  Q
    ||||||||||| | ||| | ||||||   ||||||||||| |||||||| ||||| |||||||||||| |||||||||    
23805487 gctacttgaatcatcttctgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgacagttgc 23805410  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 11823721 - 11823677
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
11823721 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 11823677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 28314816 - 28314860
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
28314816 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 28314860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 25365897 - 25365858
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcat 120  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
25365897 gctacttgaattagcttttcaaaaaacgctataagctcat 25365858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 30418494 - 30418427
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    ||||||||||||||||| || | ||||||| |||||||| |||| |||||| |||| ||||| |||||    
30418494 taaaattgagataaaaaatgattagctataagctacttggattaacttatccaaaaacgctacaagct 30418427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 38322103 - 38322166
Alignment:
54 attgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    ||||||| ||||| || ||||||||| |||||||||| | |||||||||||| ||| |||||||    
38322103 attgagaaaaaaattgataagctataagctacttgaagtggcttatcaaaaaacgcaataagct 38322166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 52596278 - 52596397
Alignment:
74 gctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatc-tttt 172  Q
    |||||| ||||||||||| |||| ||||||||||||| ||||||  | |||||||||||  || || ||  |||||||| ||| | |||| | || ||||    
52596278 gctataagctacttgaatcagctcatcaaaaaccgctttaagctagtaaaaataagctaatagttcctgagaaaatgacggttaccaaacaggtcttttt 52596377  T
173 ttaatcatacgagcttataa 192  Q
    ||||||| | ||||||||||    
52596378 ttaatcaaatgagcttataa 52596397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 15188583 - 15188649
Alignment:
73 agctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    ||||||| ||||||||||||||||  |||| ||  |||||||||| || |||||||||||| |||||    
15188583 agctataagctacttgaattagctcgtcaagaaatgctataagcttataaaaataagctattagctc 15188649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 7781198 - 7781285
Alignment:
110 tataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    ||||||||| ||||| |||||||||||||||||   ||| ||||||  | |||| || ||||||| |||| |||||||||||||||||||    
7781198 tataagctcgtgaaa-taagctataagctcgtggtgaaaagacagtacc-aaacagagctttttttatcaaacgagcttataagctataa 7781285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 12014779 - 12014735
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||| |||| |||||| ||||||| |||||||||||||||||||    
12014779 gctacctgaaatagcttttcaaaaaacgctataagctcatgaaaa 12014735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 15942491 - 15942523
Alignment:
73 agctataggctacttgaattagcttatcaaaaa 105  Q
    ||||||| |||||||||||||||||||||||||    
15942491 agctataagctacttgaattagcttatcaaaaa 15942523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 36021122 - 36021062
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgt 141  Q
    |||| |||||||||||||||||||   | ||||||||  | ||||||||||||||||||||    
36021122 gctaattgaattagcttatcaaaataagttataagctagtaaaaataagctataagctcgt 36021062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 38624205 - 38624161
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| |||||||  ||||||||||||||||||    
38624205 gctacttgaaatagcttttcaaaaaaagctataagctcatgaaaa 38624161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 39325748 - 39325704
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||  |||||| ||||||| |||||||||||||||||||    
39325748 gctacttgatatagcttttcaaaaaacgctataagctcatgaaaa 39325704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 52831558 - 52831394
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| |||| | ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| |||    
52831558 aagattgcaggggtcaaattgagataaaaaatgataagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaag 52831459  T
137 ctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaac 201  Q
    |||||||||||||||| ||| | ||||   | ||||||||||||| |||||||||||||||||||    
52831458 ctcgtgtaaaaatgaccgttaccaaacaagttttttttaatcatatgagcttataagctataaac 52831394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 212
Target Start/End: Original strand, 24418212 - 24418387
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| |||| ||||||  ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
24418212 aagattgcaggggtaaaataaagataaaaaatgataagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataagatataag 24418311  T
137 ctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccattagctcaa 212  Q
    || |||||||||||||| ||   |||| | ||| ||||||||||| ||||| ||||| ||||| |||| |||||||    
24418312 cttgtgtaaaaatgacaattagcaaacaggtctcttttaatcatatgagctgataaggtataagccataagctcaa 24418387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 24474171 - 24474043
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||  ||| | |||| |||| | ||||    
24474171 taagctataagctacttgaattagcttataaaaaaccgctataaactcatgaaaataagatataagcccgtgcaaagctgataattgccaaacaggtctt 24474072  T
171 ttttaatcatacgagcttataagctataa 199  Q
    ||||||||||| |||||||||||||||||    
24474071 ttttaatcatatgagcttataagctataa 24474043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 17425685 - 17425812
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| | ||||   | ||    
17425685 taagctataggctacttgagttagcttattaataaccgctataagctcaagaaaatacgctataagctcgtgttaaaatggcagttaccaaacaagtatt 17425784  T
171 ttttaatcatacgagcttataagctata 198  Q
    ||||||||||||| |||| |||| ||||    
17425785 ttttaatcatacgggcttttaagatata 17425812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 31736116 - 31736235
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| |||| ||||||| ||||||||| |  |||||||||  |||||||||||||||||| ||||| || |||||||||||||||||||| ||||||    
31736116 aagattggaggg-taaaatttagataaaaaattataagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagttataag 31736214  T
137 ctcgtgtaaaaatgacagttg 157  Q
     | |||||| ||||| |||||    
31736215 tttgtgtaacaatgatagttg 31736235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 23051682 - 23051813
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcata 181  Q
    |||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||  ||| |||| ||| | |||| | || |||||| ||| |    
23051682 ctacttgaattagcttatcacaaaccgctataaactcataaaaataagctgtaagctcgtgagaaagtgactgttaccaaacaggtcctttttagtcaaa 23051781  T
182 cgagcttataagctataaaccattagctcaaa 213  Q
     | |||||||||  |||||| || ||||||||    
23051782 tgggcttataagacataaactataagctcaaa 23051813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 39276423 - 39276304
Alignment:
72 aagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttt 171  Q
    ||||| || ||||||||||||||||||||||||| || ||||||||  | |||||||| ||||||||||||  ||||||||||||   |||||  || ||    
39276423 aagctttaagctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagttatcaaacgagtcatt 39276324  T
172 tttaatcatacgagcttata 191  Q
    |||| ||||| |||||||||    
39276323 tttagtcatatgagcttata 39276304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 55723210 - 55723309
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    |||||||||||| ||||||| ||||  |||  |||||||||||||||||||| | |||||||||| ||||| ||| |||||| |||||||||| ||||||    
55723210 taaaattgagatgaaaagtgataagtcataaactacttgaattagcttatcacataccgctataatctcataaaattaagctttaagctcgtgaaaaaat 55723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 47789476 - 47789554
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataag 115  Q
    ||||||| |||| | |||| |||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||    
47789476 aagattgcaggggttaaatggagataaatagtgataagctataagctacttgaattagcttatcgaaaaccgctataag 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 20988782 - 20988855
Alignment:
32 taatcaagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaa 105  Q
    |||| ||||||  |||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
20988782 taattaagattaaagggttaaaattgagataaaaaatgataagctataagctacttgaattagcttatcaaaaa 20988855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 21501686 - 21501601
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagtt 156  Q
    ||||||||| ||||||||||||||||||||||||| | ||||| |||  | |||||||||||||||||||||  ||| ||||||||    
21501686 taagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctataagctcgtgagaaagtgacagtt 21501601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 41963371 - 41963458
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagc 137  Q
    ||||||||||||| |||||| ||||||||| | ||||||||||||||||||| ||| ||||||||| ||||  | ||||| |||||||    
41963371 taaaattgagatacaaagtgataagctataagttacttgaattagcttatcacaaatcgctataagttcatagatataagttataagc 41963458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 2733406 - 2733475
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgaca 153  Q
    |||||||||||||||||||||||| | | ||||||||| |||||||| |||||||| ||||||||||||||    
2733406 tacttgaattagcttatcaaaaactgat-taagctcattaaaataagttataagctggtgtaaaaatgaca 2733475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 52986480 - 52986562
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgaca 153  Q
    |||||||||  ||||||||| ||||||||||||||| | ||||| |||||||||  ||| ||||| |||||||||||||||||    
52986480 taagctataaactacttgaactagcttatcaaaaactgttataatctcatgaaataaagttataaactcgtgtaaaaatgaca 52986562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 3535237 - 3535168
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcg 140  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| |  | |||||||||||||| ||||    
3535237 taagctataagctacttgaattagcttatcaaaaaacgctataagttagtaaaaataagctataaactcg 3535168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 26552175 - 26552267
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||||||||||||||| || ||| |||||||||||||||||||  |||| ||||| | ||||||||   | ||||||||||||| |||||||    
26552175 taaaattgagataaaaaatgataaactataggctacttgaattatgttattaaaaaactctataagccagtaaaaataagctatatgctcgtg 26552267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 44555692 - 44555777
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataa 135  Q
    |||||||||||||||   || ||||||||| |||||||| |||||||||||||||| ||||| |||||  | |||| |||||||||    
44555692 taaaattgagataaatgatgataagctataagctacttggattagcttatcaaaaaacgctaaaagctagtaaaaagaagctataa 44555777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 25886024 - 25885924
Alignment:
94 gcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataag 193  Q
    |||||||||||| | | ||||||| || |||| ||||||||||||||||| |||||||||||| | ||    || ||||||| ||||| |||||||||||    
25886024 gcttatcaaaaaacacgataagctaataaaaacaagctataagctcgtgtgaaaatgacagttacaaa----atgttttttagtcatatgagcttataag 25885929  T
194 ctata 198  Q
     ||||    
25885928 ttata 25885924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 13615223 - 13615308
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagtt 156  Q
    ||||||||| ||||||| |||||||||||| |||| | | ||||  |||| |||||||| ||||| ||||||  ||||||||||||    
13615223 taagctataagctacttaaattagcttatcgaaaaacacaataatatcataaaaataaggtataaactcgtgagaaaatgacagtt 13615308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 19801063 - 19801019
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
19801063 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 19801019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 19801825 - 19801869
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
19801825 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 19801869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 36181332 - 36181376
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
36181332 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36181376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 37114396 - 37114440
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
37114396 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 37114440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 37713291 - 37713187
Alignment:
45 agggataaaattgagataaaaag-tgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgt 143  Q
    |||| ||||||||||| |||||  || ||||||||| |||| |||||||| |||||| | || |||||||||||  ||| || || |||||||||||||     
37713291 aggggtaaaattgagagaaaaaaatgataagctataagctatttgaattaacttatcgataaacgctataagcttgtgagaaaaaactataagctcgtga 37713192  T
144 aaaaa 148  Q
    |||||    
37713191 aaaaa 37713187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 49335153 - 49335197
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
49335153 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 49335197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 52327392 - 52327328
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataa 114  Q
    ||||||||||| ||||| |  |||||| || ||||||||||||||||||||||||| || |||||    
52327392 taaaattgagagaaaaaattataagctttaagctacttgaattagcttatcaaaaaacgttataa 52327328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 32474843 - 32474930
Alignment:
44 tagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagct 131  Q
    ||||||||||||||||| ||||| || || |||||| ||||||||||  |||||| |||||| | |||| | ||  ||||||||||||    
32474843 tagggataaaattgagagaaaaaatgataggctataagctacttgaagcagcttaccaaaaaacactatcaactagtgaaaataagct 32474930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 1162272 - 1162163
Alignment:
85 cttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacga 184  Q
    ||||||||||||||||||| | ||||||||| |  | | ||||||||||||| |||||  ||| ||||  ||   |||||| || |||||| ||| ||||    
1162272 cttgaattagcttatcaaacaacgctataagatagtaagaataagctataagttcgtgagaaagtgacgtttattaaacgggtcctttttattcaaacga 1162173  T
185 gcttataagc 194  Q
    ||||||||||    
1162172 gcttataagc 1162163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 25687123 - 25687082
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||||||| |||||| ||||||| ||||||||||||||||    
25687123 gctacttgaaatagcttttcaaaaaacgctataagctcatga 25687082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 26026756 - 26026623
Alignment:
62 aaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaa 161  Q
    ||||| || |||||| || ||| |||||||||| |||||||||  |||||||||||  | ||||||||   |||||| |||  | ||||||||||   ||    
26026756 aaaaaatgataagctctaagctccttgaattagtttatcaaaacacgctataagctagtaaaaataagtcgtaagcttgtgagataatgacagttatcaa 26026657  T
162 acggatctt-ttttaatcatacgagcttataagc 194  Q
    ||||||||| ||||| | ||| ||||||||||||    
26026656 acggatctttttttagtaatatgagcttataagc 26026623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 41758607 - 41758558
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttat 99  Q
    ||||||||||| | ||| || ||||||||| |||||||||||||||||||    
41758607 taaaattgagagagaaaatgataagctataagctacttgaattagcttat 41758558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 47789588 - 47789617
Alignment:
169 ttttttaatcatacgagcttataagctata 198  Q
    ||||||||||||||||||||||||||||||    
47789588 ttttttaatcatacgagcttataagctata 47789617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 54683734 - 54683693
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    ||||||||||||||||| ||||||| || |||||||||||||    
54683734 gctacttgaattagcttttcaaaaaacgttataagctcatga 54683693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 6287974 - 6287930
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| || ||||||||||||||||    
6287974 gctacttgaaatagcttttcaaaaaacgttataagctcatgaaaa 6287930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 17896057 - 17896025
Alignment:
83 tacttgaattagcttatcaaaaaccgctataag 115  Q
    ||||||||||||||||||||||||| |||||||    
17896057 tacttgaattagcttatcaaaaaccactataag 17896025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 32012684 - 32012640
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||| ||||||||||||    
32012684 gctacttgaaatagcttttcaaaaaacgctatgagctcatgaaaa 32012640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 33984225 - 33984181
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| | |||||||||||||||||    
33984225 gctacttgaaatagcttttcaaaaaacactataagctcatgaaaa 33984181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 53284144 - 53284100
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| ||||| |||||||||||||    
53284144 gctacttgaaatagcttttcaaaaaacgctacaagctcatgaaaa 53284100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 55001706 - 55001750
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||| ||||| |||||| ||||||| |||||||||||||||||||    
55001706 gctatttgaaatagcttttcaaaaaacgctataagctcatgaaaa 55001750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 9004925 - 9004748
Alignment:
37 aagattgtagggataaaattgagataaaaa-gtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataa 135  Q
    ||||||| || | ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
9004925 aagattgcagaggtaaaattgagataaaaaagtgattagctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataa 9004826  T
136 gctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccattagctcaaat 214  Q
    |||||||||||| ||  |||  | |||||||| ||||||||||||||| ||||||||||||||| |||| |||| ||||    
9004825 gctcgtgtaaaa-tgttagtaaccaaacggatattttttaatcatacgggcttataagctataagccataagcttaaat 9004748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 1621523 - 1621625
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| | || ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||    
1621523 aagattgcaagggtaaaattgagataaaaactgataagctataagctacttgaattagcttatcaaaaaacgctaaaagcacataaaaataagctataag 1621622  T
137 ctc 139  Q
    |||    
1621623 ctc 1621625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 34640061 - 34639944
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcata 181  Q
    |||||||||||||||||| | ||||||||||||||||||  |||||||||||||||| |||||||| | |||||| | |||| | |||||| | || |||    
34640061 ctacttgaattagcttattataaaccgctataagctcatagaaataagctataagcttgtgtaaaattaacagttaccaaacaggtcttttattataata 34639962  T
182 cgagcttataagctataa 199  Q
    | ||||||||||||||||    
34639961 ccagcttataagctataa 34639944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 16869932 - 16870024
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||  | |||||||| |||||| |||||    
16869932 taaaattgaaataaaaaatgataagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataaggtataagttcgtg 16870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 22028798 - 22028655
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    ||||| ||||||||||| || |||| |||| ||| ||||||||||||||||| ||||| || |||| |  | ||||||||||||||||| |||  ||| |    
22028798 taaaactgagataaaaaatgttaagttataagctgcttgaattagcttatcagaaacctctgtaagttagtaaaaataagctataagcttgtgagaaagt 22028699  T
150 gacagttgcgaaacggatcttttttaatcatacgagcttataag 193  Q
    ||| ||| | |||||| ||||||||| ||| | |||||||||||    
22028698 gacggttaccaaacgggtcttttttagtcaaatgagcttataag 22028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 32882831 - 32882662
Alignment:
37 aagattgtagggataaaattgagataaaaagtgc-------taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataag 129  Q
    ||||||| |||| ||||||||||||||||||||        |||||| || |||||||||||||| |||||||||| |  ||||||||||  ||||||||    
32882831 aagattgcaggggtaaaattgagataaaaagtgagaagctgtaagctttaagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataag 32882732  T
130 ctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    |||||||||||||  ||||||||| || | |||||  ||| ||||| ||| | || |||| |||||||||    
32882731 ctataagctcgtgagaaaatgacaattaccaaacgagtctcttttagtcagaagaacttaaaagctataa 32882662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 34640132 - 34640063
Alignment:
45 agggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataa 114  Q
    |||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||| | ||||||||||||    
34640132 aggggtaaaattgagataaaaagtgataaactataagctacttgaattagcttattataaaccgctataa 34640063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 28363524 - 28363381
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttat-caaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaa 148  Q
    ||||||||||||||||| || ||||||||| ||||||||| |||||||||  ||||| |||||||||| ||  ||||||||||||||||| |||  |||     
28363524 taaaattgagataaaaaatgataagctataagctacttgagttagcttataaaaaaaacgctataagc-cagtaaaataagctataagcttgtgagaaag 28363426  T
149 tgacagttgcgaaacggatcttttttaatcatacgagcttataag 193  Q
    |||| ||||| ||||   |||||| || ||| | |||||||||||    
28363425 tgacggttgccaaacaagtcttttatagtcaaatgagcttataag 28363381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 6462402 - 6462469
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||  | |||||||||||||||||    
6462402 taagatataagctacttgaattagcttatcaaaaaccactataagctagtaaaaataagctataagct 6462469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 32826741 - 32826860
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||| ||| || ||||||||||||| |||||| ||||||||| | || ||||| |||||||||| |||||||||||| |  ||||  ||||| |||||     
32826741 aagatggtatgggtaaaattgagatagaaagtgataagctataagttatttgaactagcttatcacaaaccgctataaacatatgatgataagttataaa 32826840  T
137 ctcgtgtaaaaatgacagtt 156  Q
    ||||||  ||||||| ||||    
32826841 ctcgtgctaaaatgatagtt 32826860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 41892911 - 41893041
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    |||||| || ||||||||||||||||||||||||  |||||||||||  | ||||||  ||||||||| |||  | || ||| ||  | ||| |||||||    
41892911 taagctgtaagctacttgaattagcttatcaaaacacgctataagctagtaaaaatagactataagcttgtgagagaacgacggtgaccaaatggatctt 41893010  T
171 ttttaatcatacgagcttataagctataaac 201  Q
    ||||| |||||  ||||||||||| ||||||    
41893011 ttttagtcatagaagcttataagccataaac 41893041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 31812126 - 31812082
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataag 115  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
31812126 taagctatgagctacttgaattagcttatcaaaaaccgctataag 31812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 4283169 - 4283098
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||||||| |||| ||||||||||||||||||||  | |||||||   | |||||||||||||||||||||    
4283169 taagctataagctatttgaattagcttatcaaaaaatggtataagccagtaaaaataagctataagctcgtg 4283098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 13838879 - 13838925
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||    
13838879 taagctataagctacttgaattagctaatcaaaaaccactataagct 13838925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 31677240 - 31677162
Alignment:
45 agggataaaattgagataaaaagtgctaagctataggctactt-gaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||| ||||||||||||||| | || ||||||||| |||||||  ||||| ||||||||| | ||||||||||||||||    
31677240 aggggtaaaattgagataaacaatgataagctataagctacttacaattaacttatcaaagaacgctataagctcatga 31677162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 34639854 - 34639744
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| ||||||||||||||||||||||||   |||||||  |  | |||| ||| |||||||| |||  |||||||  ||| |||||| | ||||    
34639854 taagctataagctacttgaattagcttatcaaaagatgctataacatactaaaaaaaagttataagctggtgagaaaatgattgttacgaaacaggtctt 34639755  T
171 ttttaatcata 181  Q
    |||||||||||    
34639754 ttttaatcata 34639744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 6789576 - 6789620
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
6789576 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 6789620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 15498782 - 15498738
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
15498782 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 15498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 16218262 - 16218314
Alignment:
73 agctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||| |||| ||||| |||||| ||||||| |||||||||||||||||||    
16218262 agctataagctatttgaaatagcttttcaaaaaacgctataagctcatgaaaa 16218314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 24171502 - 24171458
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
24171502 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 24171458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 29525283 - 29525327
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
29525283 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 29525327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 36761199 - 36761155
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
36761199 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36761155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 37530707 - 37530751
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
37530707 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 37530751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 41734231 - 41734275
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
41734231 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 41734275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 42422946 - 42422902
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
42422946 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42422902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 42709448 - 42709404
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
42709448 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42709404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 2942016 - 2941874
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    |||||||||||||||   || |||||| || |||| ||| ||||||||||||||||  || |||||||  | ||||||||||||| |||| || | ||||    
2942016 taaaattgagataaaggatgataagctctaagctatttggattagcttatcaaaaaatgcaataagctagtaaaaataagctatatgctcatg-acaaat 2941918  T
150 gacagttgcgaaacggatcttttttaatcatacgagcttataag 193  Q
    | | ||| | |||||| | ||||||| ||| | |||||||||||    
2941917 ggcggttaccaaacgggtgttttttagtcaaatgagcttataag 2941874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 11863386 - 11863425
Alignment:
76 tataggctacttgaattagcttatcaaaaaccgctataag 115  Q
    |||| |||||||||||||||||||||||||||| ||||||    
11863386 tataagctacttgaattagcttatcaaaaaccgatataag 11863425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 15120889 - 15120948
Alignment:
62 aaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatg 121  Q
    ||||| || ||||||||| ||||  ||| ||||||||||||||| |||||||||||||||    
15120889 aaaaaatgataagctataagctatgtgagttagcttatcaaaaaacgctataagctcatg 15120948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 13359445 - 13359487
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
13359445 tacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 13359487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 17259520 - 17259450
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgt 141  Q
    |||||||||  |||||||||||| ||||| ||||| |||||||||||  |||| |||| || |||||||||    
17259520 taagctataatctacttgaattaacttataaaaaaacgctataagctagtgaatataatctttaagctcgt 17259450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 10815200 - 10815156
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| |||||||  ||||||||||||||||||    
10815200 gctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 10815156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 11653834 - 11653866
Alignment:
167 tcttttttaatcatacgagcttataagctataa 199  Q
    ||||||||||||||||||| |||||||||||||    
11653834 tcttttttaatcatacgagattataagctataa 11653866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 12280918 - 12280874
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||    
12280918 gctacttaaaatagcttttcaaaaaacgctataagctcatgaaaa 12280874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 12939844 - 12939888
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||| ||||| |||||| ||||||| |||||||||||||||||||    
12939844 gctatttgaaatagcttttcaaaaaacgctataagctcatgaaaa 12939888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 12953794 - 12953838
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||| ||||| |||||| ||||||| |||||||||||||||||||    
12953794 gctatttgaaatagcttttcaaaaaacgctataagctcatgaaaa 12953838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 18336447 - 18336380
Alignment:
129 gctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctat 197  Q
    ||||||||| | ||||||||| |||||| | |||| | ||||||| ||||||||||||||||| |||||    
18336447 gctataagcacatgtaaaaataacagttaccaaacaggtcttttt-aatcatacgagcttatatgctat 18336380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 23590776 - 23590732
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| |||||||  ||||||||||||||||||    
23590776 gctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 23590732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 34590181 - 34590269
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    ||||||||||||||||   | |||||| || ||||||  ||||||||||| ||||| ||||||||| |  | ||||||||||| |||||    
34590181 taaaattgagataaaagacgttaagctttaagctactcaaattagcttataaaaaaacgctataagttggtaaaaataagctacaagct 34590269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 40910003 - 40909816
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    |||||||||||||||||||| ||| |||||  |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| || |  | ||    
40910003 taaaattgagataaaaagtgataacctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttataagcttgtcttcagat 40909904  T
150 gacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccattagctcaaatccacgtctcactaaacagaccct 237  Q
    ||||||| | |||| | | |||||||||||||| |||||||||||||||| ||||  |||||| |  | |||| ||||||||||||||    
40909903 gacagttaccaaactggtattttttaatcatacaagcttataagctataagccatacgctcaactttatgtcttactaaacagaccct 40909816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 44984320 - 44984507
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| || |  | ||    
44984320 taaaattgagataaaaagtgataacctataagctacttgaattagcttatcaaaaaacgttataagctcgtgaaaataagttataagcttgtcttcagat 44984419  T
150 gacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccattagctcaaatccacgtctcactaaacagaccct 237  Q
    ||||||| | |||| | | |||||||||||||| ||||||||||||| || ||||  |||||| |  | |||| ||||||||||||||    
44984420 gacagttaccaaactggtattttttaatcatacaagcttataagctacaagccatacgctcaactttatgtcttactaaacagaccct 44984507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 31063013 - 31062936
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaa 148  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
31063013 taagctataagctacttgaaatagcttatcaaaaaccgctataagctcttgaaaataagttataagctcgtataaaaa 31062936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 12238594 - 12238651
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
12238594 ctacttgaattagcttatcgaaaaccgctataaactcatgaaaataagccataagctc 12238651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 42139479 - 42139387
Alignment:
45 agggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    |||| ||||||||||||||| | || |||||||||  ||||||||||||||||  ||||| |||||||||||| || |||||||||||||||||    
42139479 aggggtaaaattgagataaataatgataagctataatctacttgaattagcttgacaaaa-ccgctataagctaataaaaataagctataagct 42139387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 44810149 - 44810061
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    ||||||||||||||||| || |||  |||| ||||||||||||||||||| ||||| ||||| |||||  | |||||||||||||||||    
44810149 taaaattgagataaaaaatggtaacatataagctacttgaattagcttattaaaaaacgctaaaagctagtaaaaataagctataagct 44810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 27679142 - 27679071
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||| ||| ||||||||||||||||||| ||||| |||||||||||  | |||||||||||||||||||||    
27679142 taagccataagctacttgaattagcttattaaaaaacgctataagctagtaaaaataagctataagctcgtg 27679071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 15804495 - 15804440
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaa 105  Q
    ||||||||||||||| | || ||||||||| |||||||||||||||||||||||||    
15804495 taaaattgagataaataatgataagctataagctacttgaattagcttatcaaaaa 15804440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 44809871 - 44809992
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||| || |||| ||||  || | |||| |  |||    
44809871 taagccataagctacttgaattagcttatcacaaaccgctataagctta-caaaattagctataagctcatgaaaaagtgaccattaccaaaccggcctt 44809969  T
171 ttttaatcatacgagcttataag 193  Q
    ||||| ||| | |||||||||||    
44809970 ttttagtcaaatgagcttataag 44809992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 42034523 - 42034452
Alignment:
33 aatcaagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaa 104  Q
    |||||| |||||| || ||||||||||||||  | || |||||||||  |||||||||||||||||||||||    
42034523 aatcaaaattgtaagggtaaaattgagataagtaatgataagctataatctacttgaattagcttatcaaaa 42034452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 1875995 - 1876039
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
1875995 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 1876039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 7454669 - 7454625
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
7454669 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 7454625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 8875810 - 8875766
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
8875810 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 8875766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 12160876 - 12160920
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
12160876 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 12160920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 14958257 - 14958213
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
14958257 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 14958213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 34245383 - 34245339
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
34245383 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 34245339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 38324375 - 38324331
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
38324375 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 38324331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 35189369 - 35189302
Alignment:
75 ctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||| |||||| |||||||||||||||||| || ||||||||  | |||| ||||| ||||||||||    
35189369 ctataagctactcgaattagcttatcaaaaatcgttataagctagtaaaaacaagctttaagctcgtg 35189302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 42519850 - 42519807
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
42519850 ctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42519807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 10911666 - 10911593
Alignment:
45 agggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctc 118  Q
    |||| ||||||||||| ||||| || |||| |||| |||| |||| ||||||||||||||   |||||||||||    
10911666 aggggtaaaattgagagaaaaaatgttaagttataagctaattgatttagcttatcaaaataagctataagctc 10911593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 38808956 - 38809045
Alignment:
84 acttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttt 173  Q
    ||||| |||||||||||| ||| |||||||||||  | ||| ||||||||||||| |||  ||| |||||||| | |||| | |||||||    
38808956 acttggattagcttatcataaaacgctataagctagtaaaattaagctataagcttgtgagaaagtgacagttaccaaacaggtcttttt 38809045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 5774230 - 5774186
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| |||||||  ||||||||||||||||||    
5774230 gctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 5774186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 16496578 - 16496622
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||| |||| |||||| ||||||| |||||||||||||||||||    
16496578 gctacctgaaatagcttttcaaaaaacgctataagctcatgaaaa 16496622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 30523746 - 30523702
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| || ||| ||||||| |||||||||||||||||||    
30523746 gctacttgaaataacttttcaaaaaacgctataagctcatgaaaa 30523702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 36936035 - 36936079
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||||    
36936035 gctacttgaaatagcttttcaaaaaacgctataagctcattaaaa 36936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 39241123 - 39241167
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| |||||||  ||||||||||||||||||    
39241123 gctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 39241167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 44525949 - 44525993
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||||    
44525949 gctacttgaaatagcttctcaaaaaacgctataagctaatgaaaa 44525993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 28444776 - 28444911
Alignment:
64 aaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaac 163  Q
    |||||| ||||||||| ||||||| |||||||||||||||| || || ||||||||| |||||||||||||||||| ||||||||||| |||| | ||||    
28444776 aaagtgataagctataagctacttaaattagcttatcaaaaccctctctaagctcataaaaataagctataagctcttgtaaaaatgagagttaccaaac 28444875  T
164 ggatcttttttaatcatacgagcttataagctataa 199  Q
     | | |||||||||||||||||||||||||||||||    
28444876 aggtattttttaatcatacgagcttataagctataa 28444911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 41470155 - 41470027
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| ||||||||| ||||||||| ||||| | |||| ||||  | ||| |||| ||||||||||||  |||||||||||| | |||||| ||||    
41470155 taagctataagctacttgagttagcttataaaaaaacactatgagctagtaaaattaagttataagctcgtgagaaaatgacagttaccaaacgggtctt 41470056  T
171 ttttaatcatacgagcttataagctataa 199  Q
    ||||| | ||| |||||||||||||||||    
41470055 ttttagttatatgagcttataagctataa 41470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 38288897 - 38289008
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcata 181  Q
    |||||||||||||||||||| |||| | |||||||| || ||||||| |||||||||| || ||||||||  ||| ||||||| || ||||||| ||| |    
38288897 ctacttgaattagcttatcacaaacagttataagcttataaaaataatctataagctcatgaaaaaatgattgttacgaaacgaattttttttagtcaaa 38288996  T
182 cgagcttataag 193  Q
      ||||||||||    
38288997 taagcttataag 38289008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 13895934 - 13896050
Alignment:
47 ggataaaattgagataaaaagtgctaa-------gctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    ||||||||||||||||||||||| |||       | |||| | ||||||||||| ||||||||||||  |||||| |||||||||||||| |||||||||    
13895934 ggataaaattgagataaaaagtgataaattttgagttataagttacttgaattaacttatcaaaaacaactataaactcatgaaaataagttataagctc 13896033  T
140 gtgtaaaaatgacagtt 156  Q
     | ||| ||||||||||    
13896034 atttaataatgacagtt 13896050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 18892296 - 18892400
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    |||| |||| ||||||||||||||||||||| ||| |||||||||||  | || ||||| |  |||||||||| |||||||| ||| |||||| | ||||    
18892296 taagatataagctacttgaattagcttatcagaaagcgctataagctagtaaatataagttggaagctcgtgtgaaaatgacggttacgaaacaggtctt 18892395  T
171 tttta 175  Q
    |||||    
18892396 tttta 18892400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 25019620 - 25019744
Alignment:
58 agataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttg 157  Q
    |||||||||||   |||||||| |||||||||||||| |||||| || |   ||||||||||| |||| ||| ||||| ||||| ||||||| ||||||     
25019620 agataaaaagttacaagctataagctacttgaattagattatcataagctcatataagctcataaaaagaagttataatctcgtttaaaaataacagtta 25019719  T
158 cgaaacggatcttttttaatcatac 182  Q
    | ||||  || ||||||||||||||    
25019720 ccaaacaaatattttttaatcatac 25019744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 37740675 - 37740624
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
37740675 taagctataagctacttggattagcatatcaaaaaccgctataagctcatga 37740624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 14243236 - 14243110
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    |||||||||  ||| || |||||||||||||||||||| |||||| |||| |||||||| ||| || | ||| |||||| ||| || |  ||  | ||||    
14243236 taagctataaactatttcaattagcttatcaaaaaccgatataagttcataaaaataagttattagtttgtgaaaaaataacaattactgaataggtctt 14243137  T
171 ttttaatcatacgagcttataagctat 197  Q
    ||||| |||||| ||||||||||||||    
14243136 ttttagtcatacaagcttataagctat 14243110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 13544129 - 13544193
Alignment:
85 cttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    ||||||||||||||||| ||||  |||||| |||||  ||||||||||||| |||||||||||||    
13544129 cttgaattagcttatcacaaactactataaactcatacaaataagctataaactcgtgtaaaaat 13544193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 13680344 - 13680280
Alignment:
85 cttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    ||||||||||||||||| ||||  |||||| |||||  ||||||||||||| |||||||||||||    
13680344 cttgaattagcttatcacaaactactataaactcatacaaataagctataaactcgtgtaaaaat 13680280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 32467773 - 32467840
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    ||||||||| |||||||||||| |||||||||||||  |||||||||  | ||||||||||||||||||    
32467773 taagctataagctacttgaatt-gcttatcaaaaacgactataagctagtaaaaataagctataagctc 32467840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 43408615 - 43408488
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| |||||||||||||||||||||||||  ||||| | ||  |||||||||| ||||||||| ||  |||||||  ||| | |||||  ||||    
43408615 taagctatatgctacttgaattagcttatcaaaaa-tgctattatctagtgaaaataagttataagctcatgagaaaatgatggttaccaaacgactctt 43408517  T
171 ttttaatcatacgagcttataagctataa 199  Q
    ||||| || || || || |||||||||||    
43408516 ttttagtcgtatgaactaataagctataa 43408488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 3346223 - 3346312
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    |||||||||||||||||||| ||||||| |  | | ||||||||||||||| ||||   ||| |||||||| ||| |||| |||||||||    
3346223 taaaattgagataaaaagtgataagctacaaacaatttgaattagcttatcgaaaaatactacaagctcataaaactaagttataagctc 3346312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 12525138 - 12525183
Alignment:
32 taatcaagattgtagggataaaattgagataaaaagtgctaagcta 77  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||    
12525138 taattaagattgtaggggtaaaattgagataaaaagtgataagcta 12525183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 14911902 - 14911858
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
14911902 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 14911858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 25100177 - 25100221
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
25100177 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 25100221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 25100383 - 25100339
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
25100383 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 25100339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 35057264 - 35057304
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
35057264 ctacttgaattagcttttcaaaaatcgctataagctcatga 35057304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 36859365 - 36859321
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
36859365 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36859321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 40529638 - 40529594
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
40529638 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 40529594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 43800731 - 43800775
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
43800731 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 43800775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 24523835 - 24523902
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    ||||||||| ||||||||||| ||| ||||||||||| || ||||||  | |||||||| ||||||||    
24523835 taagctataagctacttgaatcagcatatcaaaaacctctctaagctagtaaaaataagttataagct 24523902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 27316672 - 27316743
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    |||||||||  |||||||||||| |||| ||||||  |||||||||| || |||||||| ||||| ||||||    
27316672 taagctataaactacttgaattaacttaccaaaaaatgctataagctaataaaaataagatataaactcgtg 27316743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 2595273 - 2595231
Alignment:
75 ctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    ||||| ||||||||||||||||||||||||| | |||||||||    
2595273 ctatatgctacttgaattagcttatcaaaaaacactataagct 2595231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 14354543 - 14354661
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcat 180  Q
    ||||||||| || |||||| ||||| |||||||||||  | ||||||| |||| ||||||    |||| ||| ||| | ||| || ||||||||| ||||    
14354543 gctacttgagttggcttataaaaaaacgctataagctagtaaaaataaactattagctcgacagaaaacgactgttaccaaatgggtcttttttagtcat 14354642  T
181 acgagcttataagctataa 199  Q
    | |||||||||| ||||||    
14354643 atgagcttataaactataa 14354661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 29512852 - 29512807
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||    
29512852 taagctataatctacttgaattagcttat-aaaaaccgctataagct 29512807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 13970072 - 13969985
Alignment:
110 tataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    ||||||||| ||||| |||||||||||||||||   ||| ||||||  | |||| || ||||||| |||| |||||||||||||||||||    
13970072 tataagctcgtgaaa-taagctataagctcgtggtgaaaagacagtacc-aaacagagcttttttgatcaaacgagcttataagctataa 13969985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 35764650 - 35764593
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    |||||||||||||||||| ||||| || || |||||  | ||||||||||||||||||    
35764650 ctacttgaattagcttataaaaaaacgttacaagcttgtaaaaataagctataagctc 35764593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 20697468 - 20697512
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| || ||||||||||||||||    
20697468 gctacttgaaatagcttttcaaaaaacgttataagctcatgaaaa 20697512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 29861430 - 29861347
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctata 134  Q
    ||||||||||| ||||| || ||||||||| |||| || ||||||||||||||||  |||||| | ||  | |||||||||||||    
29861430 taaaattgagagaaaaa-tgataagctataagctaattcaattagcttatcaaaatacgctatgaactagtaaaaataagctata 29861347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 36049660 - 36049728
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctc 118  Q
    ||||||||||||||| | || ||| ||||| | ||||| ||||||||||| ||||| || |||||||||    
36049660 taaaattgagataaataatgataaactataagttacttaaattagcttataaaaaaacgttataagctc 36049728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 45237755 - 45237799
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||||    
45237755 gctacttgaaatagcttttcaaaaaacgctataagctaatgaaaa 45237799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 32645853 - 32645687
Alignment:
32 taatcaagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagct 131  Q
    |||| ||||||| || | |||||| ||||||||||||| |||||| || ||||||||| ||| |||||||||| ||||||||||||||| ||||||| ||    
32645853 taattaagattggagtggtaaaatggagataaaaagtgataagctttaagctacttgacttaacttatcaaaa-ccgctataagctcattaaaataaact 32645755  T
132 ataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    |||||||||||||||||||||| || | ||||   ||||||||||||| |||||||||||| ||||||    
32645754 ataagctcgtgtaaaaatgacaattactaaacaactcttttttaatcacacgagcttataaactataa 32645687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 43822597 - 43822487
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    |||||| || ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| || | |||||||||||    
43822597 taagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagctataagcttgtgtaaaaatgacaattaccaaacggatctt 43822498  T
171 ttttaatcata 181  Q
    |||||||||||    
43822497 ttttaatcata 43822487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 37334598 - 37334436
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| | ||||||||||||||||||||| |  |||||||| ||||| ||| ||||||||| | |||||  |||||||||||||||||  |||||||     
37334598 aagattgcacggataaaattgagataaaaagcgaaaagctataagctacgtgagttagcttataataaaccattataagctcatgaaaatctgctataaa 37334499  T
137 ctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    ||||||||||||||||||||   |||| | |||||||||||||||| |||||||||| |||||    
37334498 ctcgtgtaaaaatgacagttatcaaaccggtcttttttaatcatacaagcttataagatataa 37334436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 37083938 - 37083794
Alignment:
50 taaaattgagataaaaag-tgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaa 148  Q
    |||||||| ||||||||  || ||||||||| ||||||||||||||||||| |||||  ||||||||||  | |||||||||||||||||||||  |||     
37083938 taaaattgtgataaaaatatgataagctataagctacttgaattagcttattaaaaattgctataagctagtaaaaataagctataagctcgtgagaaag 37083839  T
149 tgacagttgcgaaacggatcttttttaatcatacgagcttataag 193  Q
    |||||||| |  ||||  ||||||||||||| | |||||||||||    
37083838 tgacagttacctaacgtgtcttttttaatcaaatgagcttataag 37083794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 32326120 - 32326258
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| |||| ||||||||| ||||| | || ||||||||| ||||||||||||||||||||||||||| |||||||||  | ||||||||||| |||    
32326120 aagattgcaggggtaaaattgatataaataatgataagctataagctacttgaattagcttatcaaaaacctctataagctagtaaaaataagctacaag 32326219  T
137 ctcgtgtaaaaatgacagttgcgaaacggatctttttta 175  Q
    || |||  ||| |||| | | | |||||| |||||||||    
32326220 cttgtgagaaagtgacggataccaaacgggtctttttta 32326258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 9198195 - 9198299
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||  ||| |||| ||| | |||||| ||||    
9198195 taagctaaaagctacttgaattagcttatcaaaaaccgctataagctagtaaaaataagctttaagctcgtgagaaagtgacggttactaaacgggtctt 9198294  T
171 tttta 175  Q
    |||||    
9198295 tttta 9198299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 38684772 - 38684898
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatctt 170  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||  | |||||||  || |||||| ||  |||||||| ||| | |||||||||||    
38684772 taagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataatttacaagctcctgagaaaatgacggttaccaaacggatctt 38684871  T
171 ttttaatcatacgagcttataagctat 197  Q
    ||| | ||||| || || |||||||||    
38684872 tttcagtcatatgaactgataagctat 38684898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 32117908 - 32117833
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||| ||||||||| || ||||||||  | ||||||||||||||||||||||| | |||||||||||||||||    
32117908 taaaatttagataaaaaatgataagctatcaggtacttgaattagcttatcaaaaaactctataagctcatgaaaa 32117833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 32582557 - 32582458
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| | || |||||||||||||||||||| ||||||||| |||| ||||| |  |||||||||||  ||||||||||  | |||||||||||||||    
32582557 aagattgcaagggtaaaattgagataaaaagtgataagctataagctagttgaactgccttatcaaaaaaggctataagctagtaaaaataagctataag 32582458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 44539185 - 44539130
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||    
44539185 gctacttgaattagcttatcaaaaaccactataagcttatgaaagtaagctataag 44539130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 32109584 - 32109499
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagtt 156  Q
    ||||||||| |||||||||||||||||||||||||  ||| ||||||  | |||||||||||||||||| ||  ||| ||||||||    
32109584 taagctataagctacttgaattagcttatcaaaaattgctttaagcttttaaaaataagctataagctcatgggaaagtgacagtt 32109499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 20873186 - 20873252
Alignment:
51 aaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagct 117  Q
    ||||||| |||||| | || ||||||||| | ||||||||||||||||||||||||| |||||||||    
20873186 aaaattgggataaataatgataagctataagttacttgaattagcttatcaaaaaccactataagct 20873252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 8879510 - 8879457
Alignment:
72 aagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||    
8879510 aagctatcggctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 8879457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 12122843 - 12122887
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
12122843 gctacttgaattagcttatcaaaaaacgctataagctaatgaaaa 12122887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 2948883 - 2948953
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaacc 107  Q
    ||||||| | |||||||||| ||||||||| |  ||||||||| ||||||||||||| ||||||| |||||    
2948883 aagattgcaaggataaaatttagataaaaaataataagctataagctacttgaattaacttatcacaaacc 2948953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 1384247 - 1384162
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagtt 156  Q
    ||||||||| ||||||||| |||   ||||||||| ||| ||||||| || ||||||||| ||||||| |||  ||||||||||||    
1384247 taagctataagctacttgagttaatctatcaaaaaacgcgataagcttataaaaataagcaataagcttgtgataaaatgacagtt 1384162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 33674505 - 33674589
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    ||||| |||||| ||||||||||||||| | |  |||| |||| ||||||||||| |||||||| ||||| | |||||||||||||    
33674505 aagatggtaggggtaaaattgagataaataata-taagttataagctacttgaatcagcttatcgaaaactgttataagctcatga 33674589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 2557864 - 2557908
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
2557864 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 2557908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 34435937 - 34435981
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
34435937 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 34435981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 41991646 - 41991690
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
41991646 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 41991690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 54463418 - 54463462
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
54463418 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 54463462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 9558824 - 9558863
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||||||||| |||||||||| ||||||||||||||||    
9558824 tacttgaattagattatcaaaaaacgctataagctcatga 9558863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 11042038 - 11041987
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||||||  ||||||||||||||||||| || | ||||||||||||||||    
11042038 taagctataaactacttgaattagcttatctaagaacgctataagctcatga 11041987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 13800054 - 13800113
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgt 141  Q
    |||||||||||| ||||| ||||| |||||||||  ||| || |||||||||||||||||    
13800054 ctacttgaattaacttatgaaaaaacgctataagaccataaagataagctataagctcgt 13800113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 36237972 - 36237929
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
36237972 ctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36237929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 55226432 - 55226393
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcat 120  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
55226432 gctacttgaattagcttttcaaaaaacgctataagctcat 55226393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 13799995 - 13800037
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctata 79  Q
    ||||||| |||| |||||||||||||||||||| |||||||||    
13799995 aagattgcaggggtaaaattgagataaaaagtgataagctata 13800037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 12764808 - 12764767
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||||||| |||||| ||||||| ||||||||||||||||    
12764808 gctacttgaaatagcttttcaaaaatcgctataagctcatga 12764767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 44947255 - 44947342
Alignment:
110 tataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    ||||||||| ||||| |||||||||||||||||   ||| ||||||  | |||| || ||||||| |||| |||||||||||||||||||    
44947255 tataagctcgtgaaa-taagctataagctcgtggtgaaaagacagtacc-aaacagagctttttttatcaaacgagcttataagctataa 44947342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 30317906 - 30317950
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| ||| || ||||||| |||||||||||||||||||    
30317906 gctacttgaaatagattttcaaaaaacgctataagctcatgaaaa 30317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 36879054 - 36879118
Alignment:
71 taagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataa 135  Q
    |||||| || ||||||||||||||||||| |||||  ||||||||||  | |||||||| |||||    
36879054 taagctctaagctacttgaattagcttataaaaaaatgctataagctagtaaaaataagttataa 36879118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 52184789 - 52184833
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||    
52184789 gctacttaaaatagcttttcaaaaaacgctataagctcatgaaaa 52184833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 49873 - 50011
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataag 136  Q
    ||||||| | || |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||    
49873 aagattgcaagggtaaaattgagataaaaagtgataagctataagctacttgaattagcttatcacaaaccgctataagctcttaaaaataagctataag 49972  T
137 ctcgtgtaaaaatgacagttgcgaaacggatctttttta 175  Q
    ||||||  ||| |||| ||| | |||||| |||||||||    
49973 ctcgtgagaaagtgaccgttaccaaacgggtctttttta 50011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 883842 - 883677
Alignment:
39 gattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    ||||| |||| |||||| ||||||||||||| ||| |||||  |||||||||||| ||||||| ||||  ||||| ||||||||||||||| ||||||||    
883842 gattgcaggggtaaaatggagataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagct 883743  T
139 cgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccat 204  Q
    |||||||||||| |||||   ||| |  |||| || |||||||| |||||||| ||||||| ||||    
883742 cgtgtaaaaatgtcagttatcaaatgagtcttgttcaatcatacaagcttatatgctataagccat 883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 1243171 - 1243006
Alignment:
39 gattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagct 138  Q
    ||||| |||| |||||| ||||||||||||| ||| |||||  |||||||||||| ||||||| ||||  ||||| ||||||||||||||| ||||||||    
1243171 gattgcaggggtaaaatggagataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagct 1243072  T
139 cgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataaaccat 204  Q
    |||||||||||| |||||   ||| |  |||| || |||||||| |||||||| ||||||| ||||    
1243071 cgtgtaaaaatgtcagttatcaaatgagtcttgttcaatcatacaagcttatatgctataagccat 1243006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 3837046 - 3836882
Alignment:
38 agattgtagggataaaattgagataaaaagtgctaagctatag----gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctat 133  Q
    |||||| |||| ||||||||||||||||||   |||||||||     ||||||||||||||||||  ||||| |||||||||  |||||| |||||||||    
3837046 agattgcaggggtaaaattgagataaaaagctataagctataattaagctacttgaattagcttaggaaaaaacgctataagaacatgaacataagctat 3836947  T
134 aagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    |||||||||   |||||||| || | | | || ||||||| | ||||| |||||||||||||||||    
3836946 aagctcgtgatgaaatgaca-ttactatatgggtctttttaagtcataggagcttataagctataa 3836882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 25659508 - 25659420
Alignment:
75 ctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaac 163  Q
    ||||| |||||||||||||||||||| ||||||  | ||||||||||||||||||||||||| | || ||||||||| |||||| ||||    
25659508 ctataagctacttgaattagcttatcgaaaaccattgtaagctcatgaaaataagctataagtttgtctaaaaatgaaagttgccaaac 25659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 28175581 - 28175708
Alignment:
61 taaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcga 160  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||| |  ||||||||||||| |||||||||||||| ||| |   |||||||||||  | |    
28175581 taaaaagtgataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagctataaactcattagaaaatgacagtaacca 28175680  T
161 aacggatcttttttaatcatacgagctt 188  Q
    || || |||||| |  ||||||||||||    
28175681 aatgggtcttttgtcgtcatacgagctt 28175708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 18654709 - 18654819
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatac 182  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||| ||| ||  |||||||| |||   ||| | |||||||||||||| |     
18654709 tacttgaattagcttatcacaaacaactataagctcataaaaataatctataaactcatgagaaaatgaccgttatcaaaggaatcttttttaatcaaat 18654808  T
183 gagcttataag 193  Q
    |||||||||||    
18654809 gagcttataag 18654819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 44235513 - 44235569
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||    
44235513 tacttgaattaacttatcaaaaaacactataagctcattaaaataagctataagctc 44235569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 18654206 - 18654096
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcata 181  Q
    |||||||||||||||||||| |||| |||||||||| || ||||||| |||||| ||| || ||||||||| ||| |  |||| |||||||||| ||| |    
18654206 ctacttgaattagcttatcagaaacagctataagcttataaaaataatctataaactcatgaaaaaatgactgttac-caacgaatcttttttagtcaaa 18654108  T
182 cgagcttataag 193  Q
      ||||||||||    
18654107 taagcttataag 18654096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 44818856 - 44818814
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
44818856 tacttgaattagcttatcaaaaaacgctataagctaatgaaaa 44818814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 87266 - 87326
Alignment:
45 agggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaa 105  Q
    |||| ||||||||||||||| | || |||||| || |||||||||||||||||||| ||||    
87266 aggggtaaaattgagataaatattgttaagctttaagctacttgaattagcttatctaaaa 87326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 2525239 - 2525172
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctc 118  Q
    ||||||||||| ||||| || ||| ||||| |||||||  ||||||||||||||||| |||||||||||    
2525239 taaaattgagagaaaaaatgataa-ctataagctacttagattagcttatcaaaaactgctataagctc 2525172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 12473526 - 12473630
Alignment:
95 cttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagc 194  Q
    ||||| ||||| ||||| |||||  | |||||||||||||||||| ||  ||||| || ||| | |||||| ||||||||| ||| | ||||||||||||    
12473526 cttataaaaaaacgctacaagctagtaaaaataagctataagctcatgagaaaattacggttaccaaacgggtcttttttagtcaaatgagcttataagc 12473625  T
195 tataa 199  Q
     ||||    
12473626 cataa 12473630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 15050918 - 15050826
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||||||| |||||||  | |||||| || |||||||||||||| | |||||||  ||||||||||   | |||||| ||||||||||||||    
15050918 taaaattgacataaaaaacgataagctttaagctacttgaattagttcatcaaaagacgctataagcaagtaaaaatatgctataagctcgtg 15050826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 27826846 - 27826802
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
27826846 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 27826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 29994178 - 29994222
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
29994178 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 29994222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 42328985 - 42329029
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
42328985 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42329029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 42967822 - 42967762
Alignment:
60 ataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcat 120  Q
    ||||| |||| |||||| || |||||||||||||||||||| |||| || |||||||||||    
42967822 ataaatagtgataagctttaagctacttgaattagcttatcgaaaaacgttataagctcat 42967762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 46672643 - 46672599
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
46672643 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 46672599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 34838459 - 34838530
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaatgaca 153  Q
    ||||||||||||  |||||||||||||  |||| || || |||||||| ||||||||  |||||||||||||    
34838459 ctacttgaattaatttatcaaaaaccgtcataaacttataaaaataagatataagcttttgtaaaaatgaca 34838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 25696170 - 25696129
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||    
25696170 gctacttgaattaacttctcaaaaaacgctataagctcatga 25696129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 30046374 - 30046310
Alignment:
76 tataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgt 141  Q
    |||| ||||||||||||| ||||||| |||||| ||||| ||||  |||||||| |||||||||||    
30046374 tataagctacttgaattaacttatcacaaaccgttataaactca-aaaaataagttataagctcgt 30046310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 46349846 - 46349887
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||||||| |||||| ||||||| ||||||||||||||||    
46349846 gctacttgaaatagcttttcaaaaaacgctataagctcatga 46349887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 4060489 - 4060449
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatg 121  Q
    |||||||||| |||||| ||||||| |||||||||||||||    
4060489 gctacttgaaatagcttttcaaaaaacgctataagctcatg 4060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 13438420 - 13438488
Alignment:
45 agggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctata 113  Q
    |||| |||||||| |||||||  || ||||||||| | ||||||||||| ||||| ||||| |||||||    
13438420 aggggtaaaattgtgataaaatatgataagctataagttacttgaattatcttataaaaaaacgctata 13438488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 15568811 - 15568751
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    |||||||||||||||||| ||||| || ||  ||||||| |||||||| |||||| |||||    
15568811 ctacttgaattagcttattaaaaagcgatacgagctcataaaaataagttataagttcgtg 15568751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 19087312 - 19087268
Alignment:
110 tataagctcatgaaaataagctataagctcgtgtaaaaatgacag 154  Q
    ||||||||||||||||| |  ||||||||||| ||||||||||||    
19087312 tataagctcatgaaaatgaattataagctcgtataaaaatgacag 19087268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 24581039 - 24580971
Alignment:
131 tataagctcgtgtaaaaatgacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    ||||| ||| ||||| ||||||| || | ||||  ||||||||||||||||||||| ||||| ||||||    
24581039 tataaactcttgtaagaatgacacttaccaaacatatcttttttaatcatacgagcatataatctataa 24580971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 28494238 - 28494282
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||  |||||| ||||||| |||||||||||||||||||    
28494238 gctacttgatatagcttttcaaaaaacgctataagctcatgaaaa 28494282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 28958084 - 28958128
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| || ||||||||||||||||    
28958084 gctacttgaaatagcttttcaaaaaacgttataagctcatgaaaa 28958128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 31031856 - 31031900
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||||    
31031856 gctacttgaaatagcttttcaaaaaacgctataagcttatgaaaa 31031900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 33982277 - 33982313
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagct 117  Q
    |||||||||| |||||||||||||| |||||||||||    
33982277 gctacttgaaatagcttatcaaaaaacgctataagct 33982313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 42265239 - 42265279
Alignment:
85 cttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||| |||||| ||||||| |||||||||||||||||||    
42265239 cttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42265279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 42328126 - 42328170
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||||    
42328126 gctacttgaaatagcttttcaaaaaacgctataagctcataaaaa 42328170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 43544858 - 43544894
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagct 117  Q
    |||||||||| |||||||||||||| |||||||||||    
43544858 gctacttgaaatagcttatcaaaaagcgctataagct 43544894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 46350798 - 46350842
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| ||| || ||||||| |||||||||||||||||||    
46350798 gctacttgaaatagtttttcaaaaaacgctataagctcatgaaaa 46350842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 46536259 - 46536215
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||    
46536259 gctacttgaaatagcttttcagaaaacgctataagctcatgaaaa 46536215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 46615641 - 46615685
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| || ||||||||||||||||    
46615641 gctacttgaaatagcttttcaaaaaacgttataagctcatgaaaa 46615685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 5976720 - 5976572
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtgtaaaaat 149  Q
    |||||||||||||| ||||| | |  ||||  ||||| |||| ||||||||||| | |||||||| ||| |||||||||| || ||| ||||||| ||||    
5976720 taaaattgagataacaagtgatcatttataaactactcgaat-agcttatcaaagatcgctataaactcctgaaaataagttagaagttcgtgtacaaat 5976622  T
150 gacagttgcgaaacggatcttttttaatcatacgagcttataagctataa 199  Q
    ||||||| | ||| |  |||||||||||||||| | ||||||||||||||    
5976621 gacagttaccaaatgtgtcttttttaatcatacaaacttataagctataa 5976572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 1288407 - 1288292
Alignment:
37 aagattgtag-ggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataa 135  Q
    |||||||||| || ||||||  ||||||||||||  |||  ||| | ||||||||||| ||||||||||| |  ||||||||||||| |||||||||| |    
1288407 aagattgtagcgggtaaaatgaagataaaaagtgacaagtaataagatacttgaattaacttatcaaaaaacattataagctcatgagaataagctatga 1288308  T
136 gctcgtgtaaaaatga 151  Q
     |||||||||||||||    
1288307 actcgtgtaaaaatga 1288292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 3341174 - 3341104
Alignment:
72 aagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    ||||||||  |||||| ||||||||||||| ||||||| ||||  |||| |||||||| ||||||||||||    
3341174 aagctataatctactttaattagcttatcacaaaccgccataatttcataaaaataagttataagctcgtg 3341104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 27903901 - 27903958
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaacc 107  Q
    ||||||||||||||||| || |||| |||| |||| |||||||||||||||| |||||    
27903901 taaaattgagataaaaactgataaggtataagctatttgaattagcttatcacaaacc 27903958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 9197214 - 9197270
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaac 106  Q
    |||||||||||||||||||  ||| | ||| |||||||||||||| |||||||||||    
9197214 taaaattgagataaaaagttataaacaataagctacttgaattagtttatcaaaaac 9197270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 12130618 - 12130574
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
12130618 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 12130574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 17328693 - 17328777
Alignment:
38 agattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatga 122  Q
    |||||| |||| |||||||||||||||||    | ||  ||| |||||||||||||| |||||| ||||| ||||||||||||||    
17328693 agattgcaggggtaaaattgagataaaaaacagtgaggcataagctacttgaattagtttatcacaaacccctataagctcatga 17328777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 21860371 - 21860327
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
21860371 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 21860327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 24119201 - 24119245
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
24119201 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 24119245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 724652 - 724597
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaa 105  Q
    |||||||||| ||||||||| || |||||| ||||||  |||||||||||||||||    
724652 taaaattgaggtaaaaagtgatacgctataagctactcaaattagcttatcaaaaa 724597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 25023418 - 25023461
Alignment:
82 ctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||    
25023418 ctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 25023461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 33757725 - 33757760
Alignment:
33 aatcaagattgtagggataaaattgagataaaaagt 68  Q
    |||||||||||||||| |||||||||||||||||||    
33757725 aatcaagattgtaggggtaaaattgagataaaaagt 33757760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 16800490 - 16800436
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataa 135  Q
    ||||||| ||||||||||||| ||||| |||||| || || ||||||||||||||    
16800490 gctacttcaattagcttatcacaaaccactataaacttataaaaataagctataa 16800436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 17071862 - 17071804
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctc 139  Q
    ||||||| ||||||||||||| ||||| ||||||  | || ||||||||||||||||||    
17071862 gctacttcaattagcttatcacaaaccactataaatttataaaaataagctataagctc 17071804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 20992229 - 20992271
Alignment:
83 tacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
20992229 tacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 20992271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 20645795 - 20645751
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||||    
20645795 gctacttgaaatagcttttcaaaaaacgctataagctcataaaaa 20645751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 339001 - 339081
Alignment:
37 aagattgtagggataaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctc 118  Q
    ||||||| |||| | |||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||    
339001 aagattgcaggggtgaaatcgagataaaaggtgataagctataagctacttgaattagcttatcaaaaa-cgctataagctc 339081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 166680 - 166590
Alignment:
50 taaaattgagataaaaagtgctaagctataggctacttgaattagcttatcaaaaaccgctataagctcatgaaaataagctataagctcgtg 142  Q
    |||||| ||||||||   || |||||||||||||||||| |||||||||||||||  |||||||||||  | |||||||| ||||||||||||    
166680 taaaatagagataaatgatgataagctataggctacttggattagcttatcaaaa--cgctataagctagtaaaaataagttataagctcgtg 166590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 7128 - 7084
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||    
7128 gctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 7084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 18513 - 18469
Alignment:
81 gctacttgaattagcttatcaaaaaccgctataagctcatgaaaa 125  Q
    |||||||||| |||||| ||||||| || ||||||||||||||||    
18513 gctacttgaaatagcttttcaaaaaacgttataagctcatgaaaa 18469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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