View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_49 (Length: 253)
Name: NF9772_high_49
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 23938494 - 23938735
Alignment:
| Q |
10 |
gtagcataggaataaatccaaacccttgaaattctaattatgaatttttgttcatccatgcttaatattgatcttaaactcactcgtgaattatgannnn |
109 |
Q |
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| T |
23938494 |
gtagcataggaataaatccaaactcttgaaa--ctaattatgaatttttgttcatccatgcttaatattgatcttaaactcacttgtgaattatgatttt |
23938591 |
T |
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| Q |
110 |
nnnnagaatcaatgattcagtcactaaagaattagggcaagaataatttaatagttctctaataattcgacaacaagactcaaccatcaaagtcaagtca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23938592 |
ttttagaatcaatgattcagtcactaaagaattagggcaagaataatttaatagttctctaataattcgacaacaagactcaaccatcaaagtcaagtca |
23938691 |
T |
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| Q |
210 |
ataattcaagattcaacagtaaaagtcaaatccataattcatga |
253 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23938692 |
ataattcaagattcaacggtaaaagtcaaatccataattcatga |
23938735 |
T |
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