View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_50 (Length: 252)
Name: NF9772_high_50
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_50 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 6923774 - 6923555
Alignment:
| Q |
9 |
agcagagaaaagaaatattaatagtggtgtgtttggctttgggcgttacagtaaagtgaaagatgtggataaactgttgaaagcgttgaataatgtgtgg |
108 |
Q |
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| T |
6923774 |
agcaaagaaaagaaatattaatagtggtgtgtttggttttgggcattacagtaaagtgaaagatgtggataaactgttgaaagcgttgaataatgtgtgg |
6923675 |
T |
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| Q |
109 |
tttggggactgtaaagtggtggccaaggtagctagttttgataggtttggaaacaagaaggatgatgttagggttattggtgagggagaaaaaattaaag |
208 |
Q |
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| T |
6923674 |
tttggggactgtaaagtggtggtcaaggtagctagttttgataggtttggaaacaagaaggatgatgttagggttattggtgagggagaaaaaattaaag |
6923575 |
T |
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| Q |
209 |
atggagaaaaaagtaaggtt |
228 |
Q |
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| T |
6923574 |
atggagaaaaaagtaaggtt |
6923555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 19158866 - 19158774
Alignment:
| Q |
58 |
agtaaagtgaaagatgtggataaactgttgaaagcgttgaataatgtgtggtttggggactgtaaagtggtggccaaggtagctagttttgat |
150 |
Q |
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| T |
19158866 |
agtaaggtgaaggatgttgagaaacttttgaaagcgttaaacaacgtttggtttggtgactggaaggtagtagccaaggttgccagttttgat |
19158774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 20505298 - 20505397
Alignment:
| Q |
70 |
gatgtggataaactgttgaaagcgttgaataatgtgtggtttggggactgtaaagtggtggccaaggtagctagttttgataggtttggaaacaagaagg |
169 |
Q |
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| T |
20505298 |
gatgtcgataaacttttaaaggcactgaaaaatgtgtggtttggggactgtaaagtggtggctaaggtagctagttttgatcggtttggtaacaagaagg |
20505397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 18916574 - 18916712
Alignment:
| Q |
16 |
aaaagaaatattaatagtggtgtgtttggctttgggcgttacagtaaagtgaaagatgtggataaactgttgaaagcgttgaataatgtgtggtttgggg |
115 |
Q |
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||||||||| ||||| |||||| |||||| |||| |||||| ||| |||||||||||||| || ||||| || ||| | || |||||||||||||| | |
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| T |
18916574 |
aaaagaaatgttaatggtggtgcgtttggttttgtgcgttatgctaaggtgaaagatgtggagaagctgttaaaggcggtaaacaatgtgtggtttggtg |
18916673 |
T |
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| Q |
116 |
actgtaaagtggtggccaaggtagctagttttgataggt |
154 |
Q |
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| T |
18916674 |
attggaaagtggtggctaaggttgcgacttttgataggt |
18916712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 22556183 - 22556319
Alignment:
| Q |
16 |
aaaagaaatattaatagtggtgtgtttggctttgggcgttacagtaaagtgaaagatgtggataaactgttgaaagcgttgaataatgtgtggtttgggg |
115 |
Q |
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| T |
22556183 |
aaaaggaatgttaatggtgttgtttttggctttgtgcgttactgtaaagttaaagatgttgacaaacttttgaacgctttgaataatttaaggtttggtg |
22556282 |
T |
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| Q |
116 |
actgtaaagtggtggccaaggtagctagttttgatag |
152 |
Q |
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| || || ||||||| || || ||||||||||||| |
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| T |
22556283 |
agtggaacgtggtggataaagtgtctagttttgatag |
22556319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 14321755 - 14321702
Alignment:
| Q |
97 |
aataatgtgtggtttggggactgtaaagtggtggccaaggtagctagttttgat |
150 |
Q |
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|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
14321755 |
aataatgtctggtttggtgactgtaaagtggtggctaaggtgtctagttttgat |
14321702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 21584243 - 21584111
Alignment:
| Q |
32 |
gtggtgtgtttggctttgggcgttacagtaaagtgaaagatgtggataaactgttgaaagcgttgaataatgtgtggtttggggactgtaaagtggtggc |
131 |
Q |
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||||||| ||||| |||| ||||||| | || || | |||||| ||||| | ||||| |||||||| |||||||||||||| || || | ||||| || |
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| T |
21584243 |
gtggtgtttttggttttgtgcgttacggaaaggttagagatgtacataaattattgaaggcgttgaacaatgtgtggtttggtgattggagggtggttgc |
21584144 |
T |
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| Q |
132 |
caaggtagctagttttgataggtttggaaacaa |
164 |
Q |
| |
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|||| ||||||||| || || ||||| ||||| |
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| T |
21584143 |
taaggaagctagtttcgacagatttggtaacaa |
21584111 |
T |
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