View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_high_53 (Length: 248)

Name: NF9772_high_53
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_high_53
NF9772_high_53
[»] chr5 (1 HSPs)
chr5 (119-177)||(14317201-14317260)
[»] chr8 (3 HSPs)
chr8 (33-81)||(13811713-13811761)
chr8 (33-90)||(12643137-12643194)
chr8 (46-90)||(19382752-19382796)
[»] chr7 (2 HSPs)
chr7 (33-81)||(42510129-42510177)
chr7 (33-74)||(17205161-17205202)
[»] chr4 (1 HSPs)
chr4 (179-217)||(55924790-55924828)
[»] chr6 (1 HSPs)
chr6 (33-81)||(6695579-6695627)
[»] chr2 (1 HSPs)
chr2 (33-81)||(26501367-26501415)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 14317201 - 14317260
Alignment:
Q  119 tgatattaccaataaaattgacccc-tacaaaaaagatattagtatattgttggtggttt 177  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  14317201 tgatattaccaataaaattgaccccctacaagaaagatattagtatattgttggtggttt 14317260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 13811713 - 13811761
Alignment:
Q  33 catgagtcgccgcattcacttgtcgccttataaactcaaccctagagtt 81  Q
    |||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  13811713 catgagccgccgcattcgcttgtcgcctaataaactcaaccctagagtt 13811761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 12643194 - 12643137
Alignment:
Q  33 catgagtcgccgcattcacttgtcgccttataaactcaaccctagagttagtaaagga 90  Q
    |||||| ||||| |||| |||||||||| |||||||| ||||||||||| || |||||    
T  12643194 catgagccgccgtattcgcttgtcgcctcataaactcgaccctagagtttgtgaagga 12643137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 19382752 - 19382796
Alignment:
Q  46 attcacttgtcgccttataaactcaaccctagagttagtaaagga 90  Q
    |||| |||||||||| |||||||||||||||||||| || |||||    
T  19382752 attcgcttgtcgcctaataaactcaaccctagagtttgtgaagga 19382796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 42510129 - 42510177
Alignment:
Q  33 catgagtcgccgcattcacttgtcgccttataaactcaaccctagagtt 81  Q
    |||||| |||||||||| |||||||||| |||||||||||||| |||||    
T  42510129 catgagccgccgcattcgcttgtcgcctaataaactcaacccttgagtt 42510177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 17205161 - 17205202
Alignment:
Q  33 catgagtcgccgcattcacttgtcgccttataaactcaaccc 74  Q
    |||||| |||||||||| |||||||||| |||||||||||||    
T  17205161 catgagccgccgcattcgcttgtcgcctaataaactcaaccc 17205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 55924790 - 55924828
Alignment:
Q  179 ttcgaatccagaaacttgcatatattatgaattgtcctt 217  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  55924790 ttcgaatcctgaaacttgcatatattatgtattgtcctt 55924828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 6695627 - 6695579
Alignment:
Q  33 catgagtcgccgcattcacttgtcgccttataaactcaaccctagagtt 81  Q
    ||||||| ||||||||| |||||||||| ||||||||||| || |||||    
T  6695627 catgagttgccgcattcgcttgtcgcctaataaactcaactctggagtt 6695579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 26501367 - 26501415
Alignment:
Q  33 catgagtcgccgcattcacttgtcgccttataaactcaaccctagagtt 81  Q
    |||||| |||| |||||| ||||||||| |||||||| |||||||||||    
T  26501367 catgagccgccacattcatttgtcgcctaataaactcgaccctagagtt 26501415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University