View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_56 (Length: 247)
Name: NF9772_high_56
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 3568999 - 3569226
Alignment:
| Q |
5 |
aagcactcctggcctatgctgccaactggtttcaataatgcataaagaaaggatatgcaaatggaggagctccttatcaaattaaattgctgaactgttg |
104 |
Q |
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| T |
3568999 |
aagcactcctggcctatgctgccaactggtttcaatgatgcataaagaaaggatatgcaaatggaggagctccttatcaaattaaattgctgaactgttg |
3569098 |
T |
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| Q |
105 |
aacacaaaggccttactgtgtgaactgatgaagattgcttgcttggttgaaatgacttcagaacttcctaaaatcacatgacatggggtgataactatgc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569099 |
aacacaaaggccttactgtgtgaactgatgaagattgcttgcttggttgaaatgacttcagaacttcctaaaatcacatgacatggggtgataactatgc |
3569198 |
T |
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| Q |
205 |
tgagataggaaatttttgttcactttat |
232 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3569199 |
tgagataggaaatttttgttcactttat |
3569226 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 22027296 - 22027360
Alignment:
| Q |
127 |
aactgatgaagatt-gcttgcttggttgaaatgacttcagaacttcctaaaatcacatgacatgg |
190 |
Q |
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| T |
22027296 |
aactaatgaagatttgcttgcttgcttgaaatgacttcagaatttcctaaaatcacatgatatgg |
22027360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 8761465 - 8761528
Alignment:
| Q |
127 |
aactgatgaagattgcttgcttggttgaaatgacttcagaacttcctaaaatcacatgacatgg |
190 |
Q |
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| T |
8761465 |
aactgatgaagactgttcgtttggttgaaatgacttcggaacctcctaaaatcacatgatatgg |
8761528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 42104192 - 42104231
Alignment:
| Q |
151 |
ttgaaatgacttcagaacttcctaaaatcacatgacatgg |
190 |
Q |
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||||||||||||||||| ||||||||||||||||| |||| |
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| T |
42104192 |
ttgaaatgacttcagaatttcctaaaatcacatgatatgg |
42104231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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