View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_high_69 (Length: 214)
Name: NF9772_high_69
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_high_69 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 35043823 - 35044021
Alignment:
| Q |
1 |
atagtactccatttctaacaccaagcaaatgatgaataatttgctttcaccttcgacccttcaaccatttactatttgcaccactttgttgtttcttttc |
100 |
Q |
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| T |
35043823 |
atagtactccatttctaacaccaagcaaatgatgaataatttgctttcaccctcgacccttcaaccatttactatttgcaccactttgttgtttcttttc |
35043922 |
T |
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| Q |
101 |
gttctcttttggctactgagaagccgccgcattaatactagtgtagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacc |
200 |
Q |
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| T |
35043923 |
gttctcttttggctactgagaagccgccgcattaatactagtgtagct---------------ccagaagccggtggagcttggcctttgatcggccacc |
35044007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 35035791 - 35035860
Alignment:
| Q |
145 |
agcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
214 |
Q |
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| T |
35035791 |
agcttcaatgacaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggt |
35035860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 35029678 - 35029752
Alignment:
| Q |
146 |
gcttcaaagacaccaccacc------agaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
214 |
Q |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggt |
35029752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 35019594 - 35019661
Alignment:
| Q |
144 |
tagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggt |
214 |
Q |
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| T |
35019594 |
tagcttcaaagacaccaccg---gaagccggcggatcatggccgttaatcggccacctccacctcttaggt |
35019661 |
T |
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