View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_10 (Length: 452)
Name: NF9772_low_10
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 5232551 - 5232125
Alignment:
| Q |
10 |
gtgtcaacacgtgtcggtgtccaacaccaacatgatactgacacatgtgagtacgatcaaatatttcnnnnnnnnncaaattattactggtgttgaagtg |
109 |
Q |
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| T |
5232551 |
gtgtcaacacgtgtcggtgtccaacaccaacatgatactgatacatgtgagtacgatcaaatatttcattttttt-caaattattactg-tgttgaagtg |
5232454 |
T |
|
| Q |
110 |
tcagtgtcgtgtctgatgtctgtatctatgtttcatacatcgttcaatttagtattgaatcgagataaacttctatccatattaattaagaaacttctat |
209 |
Q |
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| T |
5232453 |
tcagtgtcgtgtctgatgtctatatctatgtttcatagatcgttcaatttagtattgaatcgagataaacttctatccatattaattaagaaacttctat |
5232354 |
T |
|
| Q |
210 |
caattttctgaaacaaatacctttgttgatctcacttgcttcagagatgaatccaattgcctttcaagctgctcaagatccttagaacttagtggaccca |
309 |
Q |
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| T |
5232353 |
ctattttctgaaacaaatacctttgttgatctcacttgcttgagagatgaatccaattgcctttcaagctgctcaagatccttagaacttagtggaccca |
5232254 |
T |
|
| Q |
310 |
aatcttcacctaaaagatttctgaaatattggagacacatacatacacacacaattaatagtgtcgatatattggcaaatatttcactatagaaaatatg |
409 |
Q |
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| T |
5232253 |
aatcttcacctaaaagatttctgaaatattggagacaca----tacacacacaattaatagtgtcgatatattggcaaatatttcactataaaaaatatg |
5232158 |
T |
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| Q |
410 |
aaaatttaatgtaaaattctttacctctgtgctc |
443 |
Q |
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| T |
5232157 |
aaaa-ttaatgtaaaaatctttacctctgtgctc |
5232125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 332
Target Start/End: Complemental strand, 5656063 - 5655957
Alignment:
| Q |
226 |
atacctttgttgatctcacttgcttcagagatgaatccaattgcctttcaagctgctcaagatccttagaacttagtggacccaaatcttcacctaaaag |
325 |
Q |
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||||||| || || || |||||||| ||||||||||| | ||| | |||||||||||||||||| || | || || |||||| || |||||||| | ||| |
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| T |
5656063 |
ataccttggtggacctgacttgcttgagagatgaatcaagttggcgttcaagctgctcaagatctttggtacctaatggacctaagtcttcaccaagaag |
5655964 |
T |
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| Q |
326 |
atttctg |
332 |
Q |
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|||||| |
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| T |
5655963 |
gtttctg |
5655957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 12054349 - 12054309
Alignment:
| Q |
86 |
caaattattactggtgttgaagtgtcagtgtcgtgtctgat |
126 |
Q |
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| T |
12054349 |
caaattattactgctgttgacgtgtcagtgtcgtgtttgat |
12054309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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