View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_12 (Length: 439)
Name: NF9772_low_12
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 246 - 421
Target Start/End: Complemental strand, 9413944 - 9413769
Alignment:
| Q |
246 |
aattttcacatcatgtcgtgatctaccacaactcacctcctatctccactggacatacgaccaaacaacaggaaaactcgacatagcattcagacacaaa |
345 |
Q |
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| T |
9413944 |
aattttcacatcatgtcgtgatctaccacaactcacctcgtatctccactggacatacgaccaaacaacaggaaaactcgacatagcattcagacacaaa |
9413845 |
T |
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| Q |
346 |
ggtataacagacacaaaccgatgggtagcatgggctattaaccgaaacaatgatctcacatcttccatgaatggag |
421 |
Q |
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| T |
9413844 |
ggtataacagacacaaaccgatgggtagcatgggctattaacccaaacaatgatctcgcatcttccatgaatggag |
9413769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 9414206 - 9414082
Alignment:
| Q |
13 |
tggacatcaaccactcaaccacccaaacccaccaacactctatattaacccctttctcctctctctccaatctcacaacct---cttcactttcaatcca |
109 |
Q |
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| T |
9414206 |
tggacatcaaccactcaaccacccaaacccaccaactctctatattaacccctttctcctctctctccaatctcacaacctcttcttcactttcaatcca |
9414107 |
T |
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| Q |
110 |
acccaacacaaaaacaaagcaacat |
134 |
Q |
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| T |
9414106 |
acccaacacaaaaacaaagtaacat |
9414082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 9414061 - 9414007
Alignment:
| Q |
129 |
caacatggttaagaacttaaggtttatgttcctcatctcaatcttaatgtttgtt |
183 |
Q |
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| T |
9414061 |
caacatggttaagaacttaaggtttatgttcctcatctcaatcttaatgtttgtt |
9414007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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