View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_13 (Length: 439)
Name: NF9772_low_13
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 44452619 - 44453030
Alignment:
| Q |
12 |
tgttacacgacagtgtccaaaaacaatagattctttcaaaaacaatgaatataaatagtattaaattagtaacaaagaagcaattggaaggaatgaatat |
111 |
Q |
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| T |
44452619 |
tgttacacgacagtgtccaaaaacaatagattctttcaaaaacaatgaatataaatagtattaaattagtaacatagaagcaattggaaggaatgaatat |
44452718 |
T |
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| Q |
112 |
gtgctttacttgcacaattatgttctcaggactacaaaactgtactaggatacgtacgtactccaaaaaatgcttaccataatgtctgttaaaagaaaca |
211 |
Q |
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| T |
44452719 |
gtgctttacttgcacaattatgttctcaggactacaaaactgtactaggatacgtacgtactccaaaaaatgcttaccataatgtctgttaaaagaaaca |
44452818 |
T |
|
| Q |
212 |
cgaaattttgaaacattttcctatttatatgctttctcattagtttcaggaaatattaaggatcaattgttatggaggttgaattaggtctaaagataac |
311 |
Q |
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| T |
44452819 |
cgaaattttgaaacattttcctatttatatgctttctcattagtttcaggaaatattaaggatcaattgttatggaggttgaattaggtctaaagataac |
44452918 |
T |
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| Q |
312 |
aagaacaaaagatgacaccacttccatttctgattttcagtttgccaaagacagagcaggacctatcttcttatctaaagaaactgatgcaactttcacc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44452919 |
aagaacaaaagatgacaccacttccatttctgattttcagtttgccaaagacagagcaggacctatcttcttatctaaagaaactgatgcaactttcacc |
44453018 |
T |
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| Q |
412 |
ctcacagcacat |
423 |
Q |
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| T |
44453019 |
ctcacagcacat |
44453030 |
T |
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