View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_15 (Length: 433)
Name: NF9772_low_15
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 252 - 423
Target Start/End: Complemental strand, 35547148 - 35546977
Alignment:
| Q |
252 |
aataaagtaaaaagagaaactcaatttacttacctcagctgatactgctacagcatcaaaccaatcatcacagtttaatgcccgcaagagaggtcttaat |
351 |
Q |
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| T |
35547148 |
aataaagtaaaaagagaaactcaatttacttacctcagctgatactgctacagcatcaaaccaatcatcacagtttaatgcccgcaagagaggtcttaat |
35547049 |
T |
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| Q |
352 |
cgagtgtcaaaatttgacacaacagccaatttcacacctgagtttctaagagctttgaacacttcttctgtg |
423 |
Q |
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| T |
35547048 |
cgagtgtcaaaatttgaaacaacagccaatttcacacctgagtttctaagagctttgaacacttcttctgtg |
35546977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 35547507 - 35547385
Alignment:
| Q |
21 |
tcagatacatgtatatatgcattatatgccgtattgtcaacaaatgagccaagtgtggtggtggaaagttaatgataaaaaacatgttcaagtgagtttg |
120 |
Q |
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| T |
35547507 |
tcagatacatgtatatatgcattatatgccgtattgtcaacaaatgagccaagtgtggtggtggaaagttaatgataaaaaacatgttcaagtgagtttg |
35547408 |
T |
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| Q |
121 |
aaccttggaagtttcattttctt |
143 |
Q |
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| T |
35547407 |
aaccttggaagtttcattttctt |
35547385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 35547296 - 35547195
Alignment:
| Q |
143 |
tatatactttaagttggtgtaaaagatttaatataatgaaacatttgaggggtgccatggctcccacccgccatgcagaaatactagcatgcatcaatag |
242 |
Q |
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| T |
35547296 |
tatatactttaagttggtgtaaatgatttaatataattgaa-------ggggtgccatggctcccacccgccatgcagaaatactagcatgcatcaatag |
35547204 |
T |
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| Q |
243 |
atcgggggg |
251 |
Q |
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| T |
35547203 |
atcgggggg |
35547195 |
T |
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