View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_16 (Length: 426)

Name: NF9772_low_16
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_16
NF9772_low_16
[»] chr7 (15 HSPs)
chr7 (183-410)||(1038944-1039172)
chr7 (19-131)||(1039224-1039336)
chr7 (232-292)||(30655598-30655658)
chr7 (232-289)||(46691848-46691905)
chr7 (232-292)||(42598058-42598118)
chr7 (232-287)||(36615808-36615863)
chr7 (233-284)||(33320774-33320825)
chr7 (232-289)||(31424775-31424832)
chr7 (232-283)||(49035862-49035913)
chr7 (238-292)||(32679023-32679077)
chr7 (232-285)||(19471096-19471149)
chr7 (232-285)||(22197744-22197797)
chr7 (232-285)||(22240024-22240077)
chr7 (232-286)||(41702938-41702992)
chr7 (72-131)||(30655758-30655818)
[»] chr1 (13 HSPs)
chr1 (308-412)||(13922613-13922717)
chr1 (232-289)||(12173026-12173083)
chr1 (232-289)||(19472872-19472929)
chr1 (232-289)||(26990673-26990730)
chr1 (233-289)||(38548750-38548806)
chr1 (243-289)||(28447802-28447848)
chr1 (234-284)||(42442015-42442065)
chr1 (232-285)||(8462976-8463029)
chr1 (232-285)||(26385035-26385087)
chr1 (232-279)||(46757378-46757425)
chr1 (234-288)||(31833965-31834019)
chr1 (308-361)||(14314999-14315052)
chr1 (240-286)||(43460785-43460831)
[»] chr8 (11 HSPs)
chr8 (232-288)||(40930834-40930890)
chr8 (232-292)||(13959219-13959279)
chr8 (232-284)||(25829272-25829324)
chr8 (183-287)||(38086419-38086524)
chr8 (232-289)||(22839326-22839383)
chr8 (232-289)||(24200625-24200682)
chr8 (240-292)||(584135-584187)
chr8 (232-289)||(5200485-5200542)
chr8 (255-292)||(7845135-7845172)
chr8 (245-289)||(30836131-30836175)
chr8 (232-292)||(44362929-44362989)
[»] chr3 (11 HSPs)
chr3 (232-287)||(28934741-28934796)
chr3 (233-288)||(10454357-10454412)
chr3 (232-289)||(31525435-31525492)
chr3 (232-289)||(43073049-43073106)
chr3 (232-289)||(52076137-52076194)
chr3 (232-288)||(44656229-44656285)
chr3 (232-284)||(47820974-47821026)
chr3 (234-287)||(20701222-20701275)
chr3 (232-289)||(9358752-9358809)
chr3 (234-291)||(28957022-28957079)
chr3 (232-292)||(8431418-8431478)
[»] chr6 (8 HSPs)
chr6 (234-292)||(11546841-11546899)
chr6 (232-289)||(6575797-6575854)
chr6 (233-284)||(34761236-34761287)
chr6 (183-289)||(33112718-33112825)
chr6 (246-285)||(10246996-10247035)
chr6 (232-289)||(15859171-15859230)
chr6 (242-292)||(14459932-14459982)
chr6 (232-285)||(33984834-33984887)
[»] chr5 (8 HSPs)
chr5 (232-284)||(23172981-23173033)
chr5 (233-286)||(22887284-22887337)
chr5 (242-289)||(9597757-9597804)
chr5 (233-284)||(9931804-9931855)
chr5 (232-292)||(10431132-10431192)
chr5 (234-286)||(25539896-25539947)
chr5 (237-289)||(42241592-42241644)
chr5 (232-287)||(819134-819189)
[»] chr2 (5 HSPs)
chr2 (232-288)||(41419692-41419748)
chr2 (234-291)||(38908743-38908800)
chr2 (233-288)||(14732344-14732399)
chr2 (235-289)||(22649068-22649122)
chr2 (232-279)||(41378216-41378263)
[»] chr4 (9 HSPs)
chr4 (231-289)||(15186984-15187042)
chr4 (232-288)||(16572142-16572198)
chr4 (232-289)||(25641272-25641329)
chr4 (240-287)||(16662312-16662359)
chr4 (234-289)||(47571574-47571629)
chr4 (232-289)||(32183352-32183410)
chr4 (237-292)||(55133108-55133160)
chr4 (253-287)||(45511407-45511441)
chr4 (232-269)||(42390795-42390832)
[»] scaffold0209 (1 HSPs)
scaffold0209 (240-292)||(12895-12947)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 183 - 410
Target Start/End: Complemental strand, 1039172 - 1038944
Alignment:
Q  183 cgagccaaagtttgtattgcaaccgattttcccttgtttgnnnnnnnnatccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatat 282  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039172 cgagccaaagtttgtattgcaaccgattttcccttgtttgttttttttatccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatat 1039073  T
Q  283 tttgccgtttgnnnnnnnnnnnnnn-tgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttataca 381  Q
    |||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039072 tttgccgtttgaaaaaaaaaaaaaaatgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttataca 1038973  T
Q  382 atggagttgacttgtggtgagatttactg 410  Q
    |||||||||||||||||||||||||||||    
T  1038972 atggagttgacttgtggtgagatttactg 1038944  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 1039336 - 1039224
Alignment:
Q  19 ttggtggcttctttgcaatagtagtagctgctatttagtaggttcaggtgtaattggtattgacgcggaggtatgcatgtggttgtcatatgtatatgtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039336 ttggtggcttctttgcaatagtagtagctgctatttagtaggttcaggtgtaattggtattgacgcggaggtatgcatgtggttgtcatatgtatatgtc 1039237  T
Q  119 ggcgtcattactc 131  Q
    |||||||||||||    
T  1039236 ggcgtcattactc 1039224  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 30655658 - 30655598
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  30655658 tccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattttgccgttt 30655598  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 46691905 - 46691848
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  46691905 tccacccgagcttgttagtgcttcttgcacgggcttgttggttaataatattttgccg 46691848  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 42598058 - 42598118
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  42598058 tccacccaagcttattagtgcttcttgcacgggtttgttggttaataatattttgccgttt 42598118  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 36615863 - 36615808
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 287  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  36615863 tccacccgagcttattagtgcttcttgcacgggcttgttgggtaataatattttgc 36615808  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 33320774 - 33320825
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  33320774 ccacccgagcttattagtgcttcttgcacgggcttgttggttaacaatattt 33320825  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 31424832 - 31424775
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  31424832 tccacccaagcttattagtgtttcttgcacgggtttgttggttaataatattttgccg 31424775  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 49035913 - 49035862
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatt 283  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  49035913 tccacccgagcttattagtgcttcttgtacggacttgttggttaataatatt 49035862  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 32679023 - 32679077
Alignment:
Q  238 cgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||    
T  32679023 cgagcttattagtgcgtcttgcacgggcttgttggttaataaaatttagccgttt 32679077  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 19471149 - 19471096
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    |||||||||||||||||||||  ||||||| ||||||| | |||||||||||||    
T  19471149 tccacccgagcttattagtgcaccttgcaccggcttgttgcttaataatatttt 19471096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 22197744 - 22197797
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    ||||||||||||| |||||||  ||||||||| ||||| |||||||||||||||    
T  22197744 tccacccgagctttttagtgcaccttgcacggacttgttggttaataatatttt 22197797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 22240077 - 22240024
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    ||||||||||||| |||||||  ||||||||| ||||| |||||||||||||||    
T  22240077 tccacccgagctttttagtgcaccttgcacggacttgttggttaataatatttt 22240024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 41702938 - 41702992
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttg 286  Q
    ||||||| | |||||||||||| |||||||||||| || |||| |||||||||||    
T  41702938 tccacccaaacttattagtgctccttgcacgggctagttggttgataatattttg 41702992  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 30655818 - 30655758
Alignment:
Q  72 ttggtattgacgcggaggtatgcatgtgg-ttgtcatatgtatatgtcggcgtcattactc 131  Q
    ||||| ||||||| | ||||||| ||||| ||||||| |||||||| ||||||||||||||    
T  30655818 ttggtgttgacgcaggggtatgcttgtggattgtcatttgtatatgccggcgtcattactc 30655758  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 13922717 - 13922613
Alignment:
Q  308 tgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttggttatagcttggcttatacaatggagttgacttgtggtgagattta 407  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  13922717 tgatttgttagttgatgtctaaattttgtagtactaaactacaaatccttgttggttatagctcggcttatacagtggagttgacttgtggtgagattta 13922618  T
Q  408 ctgcc 412  Q
    |||||    
T  13922617 ctgcc 13922613  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 12173026 - 12173083
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12173026 tccacccaagcttattagtgcttcttgcacgggcttgttggttaataatattttgccg 12173083  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 19472872 - 19472929
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  19472872 tccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattttgccg 19472929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 26990673 - 26990730
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  26990673 tccacccaagcttattagtgcttcttgcacgggcttattggttaataatattttgccg 26990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 38548750 - 38548806
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  38548750 ccacccgagcttattagtgcgtcttgcacgggtttgttggttaataatattttgccg 38548806  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 28447802 - 28447848
Alignment:
Q  243 ttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  28447802 ttattagtgcttcttgcacgggcttgttggttaataatattttgccg 28447848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 42442065 - 42442015
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  42442065 cacccgagcttattagtgcttcttgcacggacttgttggttaataatattt 42442015  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 8463029 - 8462976
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  8463029 tccacccgagctaattagtgcttcttgcacgagcttgttggttaataatatttt 8462976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 26385035 - 26385087
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  26385035 tccacccaagcttattagcgcttcttg-acgggcttgtcggttaataatatttt 26385087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 46757378 - 46757425
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataa 279  Q
    |||||| |||||||||||||| |||||||||||||||| |||||||||    
T  46757378 tccacctgagcttattagtgcatcttgcacgggcttgttggttaataa 46757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 31833965 - 31834019
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    ||||||||||| ||||||| ||||||||||  |||| ||||||||||||||||||    
T  31833965 cacccgagcttgttagtgcatcttgcacggatttgttggttaataatattttgcc 31834019  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 14314999 - 14315052
Alignment:
Q  308 tgatttattggttgatgtcaaaattttgtagtactaaactacaaatccttgttg 361  Q
    ||||||||||||||||||| |||||| |||| || ||||| |||||||||||||    
T  14314999 tgatttattggttgatgtcgaaatttagtagcacaaaacttcaaatccttgttg 14315052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 43460785 - 43460831
Alignment:
Q  240 agcttattagtgcttcttgcacgggcttgtcggttaataatattttg 286  Q
    ||||||||||||||||| |||| | ||||| ||||||||||||||||    
T  43460785 agcttattagtgcttctcgcacagacttgttggttaataatattttg 43460831  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 40930890 - 40930834
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40930890 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattttgcc 40930834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 13959279 - 13959219
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  13959279 tccacccgagcttattattgcttcttgcacgggcttgttggctaataatattttgccgttt 13959219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 25829324 - 25829272
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25829324 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 25829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 38086524 - 38086419
Alignment:
Q  183 cgagccaaagtttgtattgcaaccgattttcccttgtttgnnnnnnnna-tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataata 281  Q
    ||||||| ||||||||| ||||||||||||||||| ||||          ||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  38086524 cgagccagagtttgtatggcaaccgattttcccttctttgtatttttttctccacccgagcttattagtgcgtcttgcacgggcttattggttaataata 38086425  T
Q  282 ttttgc 287  Q
    ||||||    
T  38086424 ttttgc 38086419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 22839326 - 22839383
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  22839326 tccatccgaacttattagtgcgtcttgcacgggcttgttggttaataatattttgccg 22839383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 24200682 - 24200625
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  24200682 tccacccaagcttattagtgcttcttgcacggacttgttgattaataatattttgccg 24200625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 584187 - 584135
Alignment:
Q  240 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  584187 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgttt 584135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 5200542 - 5200485
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| | |||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  5200542 tccacccaaacttattagtgtttcttgcacggacttgttggttaataatattttgccg 5200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 7845135 - 7845172
Alignment:
Q  255 cttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7845135 cttgcacgggcttgttggttaataatattttgccgttt 7845172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 30836175 - 30836131
Alignment:
Q  245 attagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||    
T  30836175 attagtgcttctcgcacgagcttgttggttaataatattttgccg 30836131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 44362989 - 44362929
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    |||| |||| |||||||||||||||||||| || |||| ||||||||||| ||| ||||||    
T  44362989 tccatccgaacttattagtgcttcttgcacaggattgttggttaataataattttccgttt 44362929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 28934796 - 28934741
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 287  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28934796 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattttgc 28934741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 10454357 - 10454412
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10454357 ccacccgagcttattagtgctccttgcacgggcttgttggttaataatattttgcc 10454412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 31525435 - 31525492
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  31525435 tccacccaagcttattagtgcttcttgcacaggcttgttggttaataatattttgccg 31525492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 43073106 - 43073049
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  43073106 tccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccg 43073049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 52076137 - 52076194
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  52076137 tccacccgagcttattagtgcttctcgcacgggcttgttggttagtaatattttgccg 52076194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 44656285 - 44656229
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  44656285 tccacccgagcttatttgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 47820974 - 47821026
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  47820974 tccacccgagcttattagtgcgtcttgcacgggcttgttggttaataatattt 47821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 20701222 - 20701275
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 287  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  20701222 cacccgagcttattagtgcttcttgtacgggctcgttggttaataatattttgc 20701275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 9358809 - 9358752
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| ||||||||||| ||||| |||||||||||| || ||||||||||||||||    
T  9358809 tccacccaagcttattagtacttctcgcacgggcttgttgggtaataatattttgccg 9358752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 28957022 - 28957079
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgtt 291  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||||||||| ||||    
T  28957022 cacccgagcttatcagtgtttcttgcacggacttgttggttaataatattttgtcgtt 28957079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 8431478 - 8431418
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    |||| |||||||| ||||||| |||||||||||||| | | | ||||||||||||||||||    
T  8431478 tccatccgagcttgttagtgcatcttgcacgggcttcttgatcaataatattttgccgttt 8431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 11546841 - 11546899
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  11546841 cacccgagcttattagtgctacttgcacgggcttgtcagttaataatattttgccgttt 11546899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 6575797 - 6575854
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||    
T  6575797 tccacccgaacttattagtgcttcttgcacgggcttgttgattaataatattttgccg 6575854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 34761236 - 34761287
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34761236 ccacccgagcttattagtgctacttgcacgggcttgtcgtttaataatattt 34761287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 33112825 - 33112718
Alignment:
Q  183 cgagccaaagtttgtattgcaaccgattttcccttgtttgnnnnnnnnatccacccga-gcttattagtgcttcttgcacgggcttgtcggttaataata 281  Q
    ||||||||||||||||| ||||||||||| |||||| |||         ||| ||| | |||| ||||||| |||||||||||||||| |||||||||||    
T  33112825 cgagccaaagtttgtatggcaaccgatttccccttgcttgttttttttttcccccccaagctttttagtgcgtcttgcacgggcttgttggttaataata 33112726  T
Q  282 ttttgccg 289  Q
    ||||||||    
T  33112725 ttttgccg 33112718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 10246996 - 10247035
Alignment:
Q  246 ttagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  10246996 ttagtgcttcttgcacgggcttgttggttaataatatttt 10247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 15859171 - 15859230
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttg--tcggttaataatattttgccg 289  Q
    |||||||||||||||||||||  ||||||||||||||  | | |||||||||||||||||    
T  15859171 tccacccgagcttattagtgcgccttgcacgggcttgttttgattaataatattttgccg 15859230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 14459932 - 14459982
Alignment:
Q  242 cttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    |||||||||||| || ||||||||| || || |||||||||||||||||||    
T  14459932 cttattagtgctcctcgcacgggctcgttggctaataatattttgccgttt 14459982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 33984834 - 33984887
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatatttt 285  Q
    |||||||||||||||||||||| ||   |||||||||| || ||||||||||||    
T  33984834 tccacccgagcttattagtgctcctcatacgggcttgttggctaataatatttt 33984887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 23173033 - 23172981
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23173033 tccacccgagcttattagtgcttcttgcacgggcttgttggttaataatattt 23172981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 22887284 - 22887337
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttg 286  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  22887284 ccacccgagcttattagtgcatctcgcacgggcttgttggttaataatattttg 22887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 9597804 - 9597757
Alignment:
Q  242 cttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9597804 cttattagtgcttcttgcacaggcttgttggttaataatattttgccg 9597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 9931855 - 9931804
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattt 284  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  9931855 ccacccaagcttgttagtgcttcttgcacgggcttgttggttaataatattt 9931804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 10431132 - 10431192
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||| ||||||    
T  10431132 tccacccgaacttattaatgcttcttgcacgggtttgttgattaataatatttttccgttt 10431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 25539896 - 25539947
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttg 286  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  25539896 cacccgagcttattaatgcttcttgcacgggcttgttgg-taataatattttg 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 42241644 - 42241592
Alignment:
Q  237 ccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||||||||||||||| |||||| ||| ||| | |||||||||||||||||||    
T  42241644 ccgagcttattagtgcatcttgcccggacttattggttaataatattttgccg 42241592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 819189 - 819134
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 287  Q
    ||||||||| |||||||||||||||| ||||| ||| | || ||||||||||||||    
T  819189 tccacccgaacttattagtgcttcttacacggacttattgggtaataatattttgc 819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 41419692 - 41419748
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  41419692 tccacccgagcttattagtgcatcttgcacgggcttgttggttaataatattttgcc 41419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 38908743 - 38908800
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgtt 291  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||    
T  38908743 cacccgagcttattagtgcatcttgcacggccttattggttaataatattttgccgtt 38908800  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 14732399 - 14732344
Alignment:
Q  233 ccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    ||||||||||||||||||||  || |||||||||||| ||||||||||||||||||    
T  14732399 ccacccgagcttattagtgcacctcgcacgggcttgttggttaataatattttgcc 14732344  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 22649122 - 22649068
Alignment:
Q  235 acccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  22649122 acccaagcttattagtacttcttgcacgggcttgttggttaataaaattttgccg 22649068  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 41378263 - 41378216
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataa 279  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  41378263 tccacccgagcttattagtgcatctttcacgggcttgttggttaataa 41378216  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 15187042 - 15186984
Alignment:
Q  231 atccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  15187042 atccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccg 15186984  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 16572142 - 16572198
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgcc 288  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  16572142 tccacccgagcttattagtgcatctcgcacgggcttgttggttaataatattttgcc 16572198  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 25641329 - 25641272
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  25641329 tccacccaagctttttagtgcttcttgcacgggcttgttggttaataacattttgccg 25641272  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 16662359 - 16662312
Alignment:
Q  240 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgc 287  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  16662359 agcttattagtgcttctcgcacgggcttgttggttaataatattttgc 16662312  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 47571629 - 47571574
Alignment:
Q  234 cacccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 289  Q
    |||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||    
T  47571629 cacccgagcttattagtgctccttccacgggtttgttggttaataatattttgccg 47571574  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 32183352 - 32183410
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttg-tcggttaataatattttgccg 289  Q
    |||||||||||||||||||||  |||||||||||||| | |||||||||||||||||||    
T  32183352 tccacccgagcttattagtgcgccttgcacgggcttgtttggttaataatattttgccg 32183410  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 55133160 - 55133108
Alignment:
Q  237 ccgagcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||| |||||||||||||||||||||||||   |||||||||||||||| |||||    
T  55133160 ccgagtttattagtgcttcttgcacgggctt---ggttaataatattttgtcgttt 55133108  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 45511441 - 45511407
Alignment:
Q  253 ttcttgcacgggcttgtcggttaataatattttgc 287  Q
    ||||||||||||||||| |||||||||||||||||    
T  45511441 ttcttgcacgggcttgttggttaataatattttgc 45511407  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 42390832 - 42390795
Alignment:
Q  232 tccacccgagcttattagtgcttcttgcacgggcttgt 269  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  42390832 tccacccgagcttattagtacgtcttgcacgggcttgt 42390795  T

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Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 12947 - 12895
Alignment:
Q  240 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgccgttt 292  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  12947 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgttt 12895  T

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