View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_17 (Length: 425)

Name: NF9772_low_17
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_17
NF9772_low_17
[»] chr5 (4 HSPs)
chr5 (17-414)||(27925805-27926203)
chr5 (182-225)||(27925088-27925131)
chr5 (42-95)||(2627810-2627863)
chr5 (41-97)||(36906985-36907041)
[»] scaffold0015 (1 HSPs)
scaffold0015 (41-147)||(38234-38340)
[»] chr7 (4 HSPs)
chr7 (42-147)||(9229298-9229402)
chr7 (42-151)||(43728278-43728387)
chr7 (41-92)||(47843487-47843538)
chr7 (41-93)||(7858222-7858274)
[»] chr2 (3 HSPs)
chr2 (41-122)||(7018176-7018257)
chr2 (41-127)||(18561312-18561398)
chr2 (41-122)||(17329069-17329150)
[»] chr8 (4 HSPs)
chr8 (41-96)||(32856234-32856288)
chr8 (41-100)||(11755426-11755485)
chr8 (41-95)||(16591141-16591195)
chr8 (41-93)||(24888488-24888540)
[»] chr3 (3 HSPs)
chr3 (41-124)||(27163783-27163866)
chr3 (41-97)||(45472814-45472870)
chr3 (42-92)||(32835558-32835607)
[»] chr4 (1 HSPs)
chr4 (41-107)||(40217914-40217980)
[»] chr1 (7 HSPs)
chr1 (41-92)||(4972792-4972843)
chr1 (41-100)||(16123126-16123185)
chr1 (41-95)||(11767496-11767550)
chr1 (42-124)||(31183803-31183885)
chr1 (17-147)||(10443760-10443890)
chr1 (42-147)||(25294302-25294406)
chr1 (42-147)||(50709801-50709905)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 27925805 - 27926203
Alignment:
Q  17 agggtagtcaatgcttannnnnnncaagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaattt 116  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  27925805 agggtagtcaatgcttatttttttcaagtattttacatacatataagttttattgtaaaaaatttgttaacgtatcttagcagtgtcgtattctcaattt 27925904  T
Q  117 aaaaaattccgtggatctgcgtacccgtatcatattatacatgtatctgtatccagacttcatagattatttgttttattcattctactaaatattttat 216  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27925905 aaaaaattccgtgtatccgcgtacccgtatcatatcatacatgtatctgtatcc-gacttcatagattatttgttttattcattctactaaatattttat 27926003  T
Q  217 ttggataaatagctacatacgagatatttttatcaaatgaagccaaaatcagatttggcgcgttgaagtgaagatatttttgtatctaccaacaagccgt 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27926004 ttggataaatagctacatacgagatatttttatgaaatgaagccaaaatcagatttggcgcgttgaagtgaagatatttttgtatctaccagcaagccgt 27926103  T
Q  317 accatattatataaggaccgttgaagtgaagccaaaatcaaaacactttgaaacgaaacctttttggcgcgcacaagt--tataacccattcacctctct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27926104 accatattatataaggaccgttgaagtgaagccaaaatcaaaacactttgaaacgaaacctttttggcgcgcacaagttatataacccattcacctctct 27926203  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 27925088 - 27925131
Alignment:
Q  182 attatttgttttattcattctactaaatattttatttggataaa 225  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  27925088 attatttgttttatccattctactaaatattttatttggataaa 27925131  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 2627863 - 2627810
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatctta 95  Q
    |||||||||| ||||||||||||||||   |||||  |||||||||||||||||    
T  2627863 aagtattttacatacatataagttttagtataaaatttttgttaacgtatctta 2627810  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 36906985 - 36907041
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagc 97  Q
    |||| |||||| || ||||||| |||||   ||||||||||||||||||||||||||    
T  36906985 caagaattttacatgcatataaattttagtataaaaaatttgttaacgtatcttagc 36907041  T

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Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 38340 - 38234
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaattccgtggatctgcgtac 140  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||| || |  |||  | ||||||||||| | || | ||||| ||||    
T  38340 caagtattttacatacatataagttttaatataaaaaatttgttaacgtatcttagccgtattttatccttaatttaaaaaaattcgcgtatctgtgtac 38241  T
Q  141 ccgtatc 147  Q
    |||||||    
T  38240 ccgtatc 38234  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 9229402 - 9229298
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaattccgtggatctgcgtacc 141  Q
    |||||||||| |||||||||| |||||   |||| ||||||||||||||||||||| || ||||||  | ||||| ||||||| || | ||| |||||||    
T  9229402 aagtattttacatacatataaattttagtataaataatttgttaacgtatcttagccgtatcgtatcat-aattttaaaaatttcgcgtatccgcgtacc 9229304  T
Q  142 cgtatc 147  Q
    ||||||    
T  9229303 cgtatc 9229298  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 43728278 - 43728387
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaattccgtggatctgcgtacc 141  Q
    |||||||| | ||||||||||| ||||   |||||||||||| |||||||| |||| || ||||||| | ||||||||||| | || | |||  ||||||    
T  43728278 aagtatttcacatacatataagatttagtataaaaaatttgtcaacgtatcctagccgtatcgtattctaaatttaaaaaaattcgcgtatccacgtacc 43728377  T
Q  142 cgtatcatat 151  Q
    ||||||||||    
T  43728378 cgtatcatat 43728387  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 47843538 - 47843487
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatc 92  Q
    ||||||||||| |||||||||||||||||  ||||||| |||||| ||||||    
T  47843538 caagtattttacatacatataagttttattataaaaaaattgttatcgtatc 47843487  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 7858222 - 7858274
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatct 93  Q
    ||||||||||| || |||||||||||||   ||||| ||||||||||||||||    
T  7858222 caagtattttacatgcatataagttttaatataaaagatttgttaacgtatct 7858274  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 7018176 - 7018257
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaa 122  Q
    ||||||||||| |||||| |||||||||   |||||| ||||||||||||||||||| || ||||||  | |||||||||||    
T  7018176 caagtattttacatacatgtaagttttagtataaaaattttgttaacgtatcttagccgtatcgtatcctaaatttaaaaaa 7018257  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 18561312 - 18561398
Alignment:
Q  41 caagtattttaaatacatataagtttt-atagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaattccg 127  Q
    ||||||||||| || ||||||| |||| ||| ||||||||||||||||||||| |||| || |  |||||| ||||| ||||||||||    
T  18561312 caagtattttacattcatataaattttgata-taaaaaatttgttaacgtatcctagccgtattatattttaaattttaaaaattccg 18561398  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 17329069 - 17329150
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaa 122  Q
    ||||||||| | ||||| ||||||||||   ||||||||||||||||||||||  || || ||||||  | |||||||||||    
T  17329069 caagtatttcacatacaaataagttttagtataaaaaatttgttaacgtatctcggctgtatcgtatcctaaatttaaaaaa 17329150  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 32856234 - 32856288
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttag 96  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||    
T  32856234 caagtattttacatacatataagttttaga-taaaaaaattgttaacgtatcttag 32856288  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 11755485 - 11755426
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagt 100  Q
    ||||||||||| || |  ||||||||||   |||||||||||||||||||||||||||||    
T  11755485 caagtattttacatgcgcataagttttaatataaaaaatttgttaacgtatcttagcagt 11755426  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 16591195 - 16591141
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatctta 95  Q
    ||||||||||| || ||||||||||||||  |||||  |||||||||||||||||    
T  16591195 caagtattttacatgcatataagttttattataaaatttttgttaacgtatctta 16591141  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 24888540 - 24888488
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatct 93  Q
    ||||||||||| ||||| ||| ||||||   ||||||||||||||||||||||    
T  24888540 caagtattttacatacaaataggttttagtataaaaaatttgttaacgtatct 24888488  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 27163866 - 27163783
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaatt 124  Q
    |||| |||||| ||| ||||||||||||   |||||  ||||||||||||||||||| || |||||| || |||||||||||||    
T  27163866 caagaattttacatatatataagttttagtataaaatttttgttaacgtatcttagccgtatcgtatcttaaatttaaaaaatt 27163783  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 45472814 - 45472870
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagc 97  Q
    ||||||||||| ||||||||||||||||   |||||| ||||||||| |||||||||    
T  45472814 caagtattttacatacatataagttttaatataaaaattttgttaacatatcttagc 45472870  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 32835558 - 32835607
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatc 92  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  32835558 aagtattttacatacatataagtgttata-taaaaaatttgttaacatatc 32835607  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 40217914 - 40217980
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtat 107  Q
    ||||||||||| ||||||||||||||||   |||| | ||||||||||||||||||| || ||||||    
T  40217914 caagtattttatatacatataagttttagtataaatattttgttaacgtatcttagccgtatcgtat 40217980  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 4972843 - 4972792
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatc 92  Q
    ||||||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  4972843 caagtattttacatacatataagttttagtataaaaattttgttaacgtatc 4972792  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 16123126 - 16123185
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagt 100  Q
    ||||||||||| || ||||||||| |||   |||||||||||||||||||||||| ||||    
T  16123126 caagtattttacatgcatataagtgttagtataaaaaatttgttaacgtatcttaacagt 16123185  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 11767550 - 11767496
Alignment:
Q  41 caagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatctta 95  Q
    ||||||||||| ||||||||| ||||||   |||||| |||||||||||||||||    
T  11767550 caagtattttacatacatatatgttttagtataaaaattttgttaacgtatctta 11767496  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 31183803 - 31183885
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaatt 124  Q
    |||||||||| || ||||||| ||||| | |||| | ||||||||||||||||||| || ||||||  | ||||| |||||||    
T  31183803 aagtattttacatgcatataaattttagaataaatattttgttaacgtatcttagccgtatcgtatcctaaattttaaaaatt 31183885  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 10443760 - 10443890
Alignment:
Q  17 agggtagtcaatgcttannnnnnncaagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaattt 116  Q
    |||||||||||||||||       ||||||||||| ||||||||||||||||   | |||| || |||||| |||| |||| || ||||||  | |||||    
T  10443760 agggtagtcaatgcttattttcttcaagtattttatatacatataagttttagtatgaaaatttcgttaacttatcatagccgtatcgtatcctaaattt 10443859  T
Q  117 aaaaaattccgtggatctgcgtacccgtatc 147  Q
    |||||| |||  | ||| ||||||| |||||    
T  10443860 aaaaaaatccacgtatccgcgtacctgtatc 10443890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 25294406 - 25294302
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaattccgtggatctgcgtacc 141  Q
    |||||||||| |||||||||||||||||  | |||  |||||||||||||| || | || ||||||  | ||||| ||||| | |||| ||| |||||||    
T  25294406 aagtattttacatacatataagttttattat-aaatttttgttaacgtatcataaccgtatcgtatcctaaattttaaaaaatgcgtgtatccgcgtacc 25294308  T
Q  142 cgtatc 147  Q
    ||||||    
T  25294307 cgtatc 25294302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 50709801 - 50709905
Alignment:
Q  42 aagtattttaaatacatataagttttatagtaaaaaatttgttaacgtatcttagcagtgtcgtattttcaatttaaaaaattccgtggatctgcgtacc 141  Q
    |||||||||| || ||||||| |||||   |||| | ||| ||||||||||||||| || ||||||  | ||||| ||||||| |||| ||| |||||||    
T  50709801 aagtattttacatgcatataaattttagtataaatattttattaacgtatcttagccgtatcgtatcct-aattttaaaaatttcgtgtatccgcgtacc 50709899  T
Q  142 cgtatc 147  Q
    ||||||    
T  50709900 cgtatc 50709905  T

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