View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_18 (Length: 416)
Name: NF9772_low_18
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 24455212 - 24455605
Alignment:
| Q |
10 |
acgcccccaagaaatcacttgattagtcttgtaaatagcatagcacgccgcaaagttgtcccgtttgagcgatttggcgtggttcaaggccttgtgcttc |
109 |
Q |
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| T |
24455212 |
acgcccccaagaaatcacttgatcagtcttgtaaatagcatagcacgccacaaagttgtcccgtttgagtgatttgacgtggttcaaggccttgtgcttc |
24455311 |
T |
|
| Q |
110 |
aaattactttcccatgaccatccattgaattagttacataaactcgattaaaacaattgataacctgctnnnnnnnctctaaaatagctcttaattgatg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||| |
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| T |
24455312 |
aaattactttcccatgaccatccattgaattagttacataaactcgattaaaaaaattgataacctgctaaaaaaactctaaaatatcgcttaattgatt |
24455411 |
T |
|
| Q |
210 |
ctaaaaatactatatgactgaatgtcatcataaagcatggtcttttaaaaatacaatattgtcaagatccacaaaccagcatgattctaccctacctttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455412 |
ttaaaaatactatatgactgaatgtcatcataaagcatggtcttttaaaaattcaatattgtcaagatccacaaaccagcatgattctaccctacctttt |
24455511 |
T |
|
| Q |
310 |
cctattcctttttgtattagtttcaaaaataataggaattggcctaatttgggttcccaaccacttcaaaccatcatcactaatatgttggtct |
403 |
Q |
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| T |
24455512 |
cctattcctttttgtattagtttcagaaataatagtaattggcctaatttgggttcccaaccacttcaaaccatcatcactaatatgttggtct |
24455605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 24478816 - 24478879
Alignment:
| Q |
324 |
tattagtttcaaaaataataggaattggcctaatttgggttcccaaccacttcaaaccatcatc |
387 |
Q |
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| T |
24478816 |
tattagtttcagatataaaaggaattggccaaatttgggtgcccaaccacttcaaaccatcatc |
24478879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 24694266 - 24694217
Alignment:
| Q |
338 |
ataataggaattggcctaatttgggttcccaaccacttcaaaccatcatc |
387 |
Q |
| |
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|||| ||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
24694266 |
ataaaaggaattggccaaatttgggtgcccaaccacttcaaaccatcatc |
24694217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 24413600 - 24413644
Alignment:
| Q |
347 |
attggcctaatttgggttcccaaccacttcaaaccatcatcacta |
391 |
Q |
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| T |
24413600 |
attggccaaatttgggtgcccaaccacttcaaactatcatcacta |
24413644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 8253546 - 8253473
Alignment:
| Q |
88 |
gtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaa |
161 |
Q |
| |
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||||||||||| ||||||||| |||||||||| |||| |||| ||||||||| ||| ||||||||| |||| |
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| T |
8253546 |
gtggttcaaggtcttgtgctttaaattacttttccatatgcatctattgaattatttaagtaaactcgactaaa |
8253473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 13962374 - 13962222
Alignment:
| Q |
87 |
cgtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaacaattgataacctgctnnnnnnnc |
186 |
Q |
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||||||||||||||||||||||| ||| | | || |||| |||||||||||||| || ||||||||||| |||||||||||| ||| |||| | |
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| T |
13962374 |
cgtggttcaaggccttgtgcttcgaatcattctctcatgctcatccattgaattatttgcataaactcgactaaaacaattgagaacttgctaaaaagac |
13962275 |
T |
|
| Q |
187 |
tctaaaatagctcttaattgatgctaaaaatactatatgactgaatgtcatca |
239 |
Q |
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||||||||| | | ||| |||||||||||||||||||||||||| |||||||| |
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| T |
13962274 |
tctaaaataacacataaatgatgctaaaaatactatatgactgactgtcatca |
13962222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 34180220 - 34180084
Alignment:
| Q |
93 |
tcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaacaattgataacctgctnnnnnnnctctaaa |
192 |
Q |
| |
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|||||| ||| |||||| ||||||||||| | | |||||||| ||||| ||||||||| |||| |||||||||||||||| |||| || ||| |
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| T |
34180220 |
tcaaggtcttatgcttcgaattactttcctaggctcatccattaaattatttacataaaatcgactaaaacaattgataacttgctaaaagcactaaaaa |
34180121 |
T |
|
| Q |
193 |
atagctc-ttaattgatgctaaaaatactatatgact |
228 |
Q |
| |
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||| ||| |||| |||||||||||||||||||||||| |
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| T |
34180120 |
ataactctttaaatgatgctaaaaatactatatgact |
34180084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 40538113 - 40538309
Alignment:
| Q |
17 |
caagaaatcacttgattagtcttgtaaatagcatagcacgcc-gcaaagttgtcccgtttgagcgatttggcgtggttcaaggccttgtgcttcaaatta |
115 |
Q |
| |
|
|||||||||||||||||| | |||| || ||||||||||| | ||| |||| | ||||| | ||||| | ||||||||||||||||| ||| ||| | |
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| T |
40538113 |
caagaaatcacttgattaatattgttaaaagcatagcacgactgcatagttttatggtttgggtaatttgacatggttcaaggccttgtgattcgaatga |
40538212 |
T |
|
| Q |
116 |
ctttcccatgaccatccattgaattagttacataaactcgattaaaacaattgataacctgctnnnnnnnctctaaaatagctcttaattgatgctaa |
213 |
Q |
| |
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|| | ||||| |||||||||||| | ||||| || |||| |||||||| ||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
40538213 |
ctcttccatgctcatccattgaataatatacatgaaatcgactaaaacaaatgataacttgctaaaaaga-tctaaaatagctcctaattgatgctaa |
40538309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 26454516 - 26454579
Alignment:
| Q |
88 |
gtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaa |
151 |
Q |
| |
|
||||||||||||||||||||| |||||||| || || | ||| |||||| |||| ||||||||| |
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|
| T |
26454516 |
gtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaa |
26454579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 14614573 - 14614527
Alignment:
| Q |
95 |
aaggccttgtgcttcaaattactttcccatgaccatccattgaatta |
141 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
14614573 |
aaggccttgtgcttcggattactttcccatgtgcatccattgaatta |
14614527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 15295565 - 15295706
Alignment:
| Q |
91 |
gttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaacaattgataacctgctnnnnnnnctcta |
190 |
Q |
| |
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|||||| |||||| ||| ||||||| |||||||| |||||||| ||||| |||||||||||| | ||||| |||| ||||| | || || | |
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| T |
15295565 |
gttcaatgccttgggctacaaattattttcccatactcatccattaaattatttacataaactcaactaaaaaaatt-ataactttctagaaaaactaga |
15295663 |
T |
|
| Q |
191 |
aaatagctcttaattgatgctaaaaatactatatgactgaatg |
233 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||| | |||||| |
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|
| T |
15295664 |
aaataactcttaaatgatgctaaaaagactatataattgaatg |
15295706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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