View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9772_low_19 (Length: 411)
Name: NF9772_low_19
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 10049767 - 10050165
Alignment:
| Q |
1 |
atatgaaatcggaaaattcaatggaacaaaatgatttttcctattgaagg------atgcagatgaaaaatatacttatttcacaaaagttgcacaagac |
94 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
10049767 |
atatgaaatcaaaaaattcaatggaaaaaaatgatttttcctattggaggggatatatgtagatgaaaaatctacttatttcacaaaagttgcacaaggc |
10049866 |
T |
|
| Q |
95 |
attagcggaaaaagaacaaaaacctatgagtatgaagaatgaggattgggatggattagatctcaaagcacgagccgccataatctcatgccttgagata |
194 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10049867 |
attagcgagaaaagaacaaaaacctatgagtatgaacgatgaggattgggaagaattagatctcaaagcacgagccgccataatctcatgccttgagata |
10049966 |
T |
|
| Q |
195 |
gatgttgcattcttggtaaatgaagaagcaacaacatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctact |
294 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10049967 |
gatgttgcattcttagtaaatgaagaagcaacaacatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctact |
10050066 |
T |
|
| Q |
295 |
tgaaatccaaattgtatacatgcaagatggaggaaggcacctcaatacaggattatgtcaacaagtttgataggattataccagacttgaaggatatag |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10050067 |
tgaaatccaaattgtatacatgcaagatggaggaatgcacctcaatacgggattatgtcaacaagtttgataggattataccagacttgaaggatatag |
10050165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 10050683 - 10050292
Alignment:
| Q |
1 |
atatgaaatcggaaaattcaatggaacaaaatgatttttcctattgaaggatgcagatgaaaaatatacttatttcacaaaagttgcacaagacattagc |
100 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
10050683 |
atatgaaatcgaaaaattcaacggaa-aaaatgatttttcctactggaggatgcagatgagaaatcgacttatttcacaaaagttgcacaaggcattagc |
10050585 |
T |
|
| Q |
101 |
ggaaaaagaacaaaaacctatgagtatgaagaatgaggattgggatggattagatctcaaagcacgagccgccataatctcatgccttgagatagatgtt |
200 |
Q |
| |
|
|| |||||||||||||| | ||||||||||| ||||||||||| | |||||||||| ||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
10050584 |
gggaaaagaacaaaaacttgtgagtatgaaggatgaggattggaacaaattagatctcgaagcacgagcctccataatcttatgccttgagagagatgtt |
10050485 |
T |
|
| Q |
201 |
gcattcttggtaaatgaagaagcaacaacatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctacttgaaat |
300 |
Q |
| |
|
| |||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||| ||| |||||||||||||||| | |||||||| |||| |
|
|
| T |
10050484 |
gtgttcttgttaaatgaagaagcaacgagagctggggtgtggtcaaagttagagaaaaatttcttgacgaaaactctaacaaatcggatctacttaaaat |
10050385 |
T |
|
| Q |
301 |
ccaaattgtatacatgcaagatggaggaaggcacctcaatacaggattatgtcaacaagtttgataggattataccagacttgaaggatatag |
393 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| || | ||||||||||||| |
|
|
| T |
10050384 |
ctaaattgtatacatgcaagatggaggaaggcacctcaatccgggattatgtcaacaagtttgatgggattatatcatatttgaaggatatag |
10050292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 28 - 393
Target Start/End: Complemental strand, 14092142 - 14091777
Alignment:
| Q |
28 |
aaaatgatttttcctattgaaggatgcagatgaaaaatatacttatttcacaaaagttgcacaagacattagcggaaaaagaacaaaaacctatgagtat |
127 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| | ||||| |||||||||||||| ||| | |||| || |||||||||||||||| ||||||| |
|
|
| T |
14092142 |
aaaatgatttttcctattggaggatgtagatgaaaaatctgcttatatcacaaaagttgcataaggcgttagtgggaaaagaacaaaaacctgtgagtat |
14092043 |
T |
|
| Q |
128 |
gaagaatgaggattgggatggattagatctcaaagcacgagccgccataatctcatgccttgagatagatgttgcattcttggtaaatgaagaagcaaca |
227 |
Q |
| |
|
|||| ||||||||||||| | |||||||| ||||||| || |||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
14092042 |
gaaggatgaggattgggaagagttagatcttgaagcacgggcagccataatcttatgccttgagagggatgttgcatttttggttaatgaagaagcaact |
14091943 |
T |
|
| Q |
228 |
acatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctacttgaaatccaaattgtatacatgcaagatggagg |
327 |
Q |
| |
|
|| |||| || ||||||||||||||||||| |||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14091942 |
actgctggcgtatggtcaaagttagagaaaactttcatgacgaaaactctgacaaatcgaatctatttgaaatccaaattgtatacatgcaagatggagg |
14091843 |
T |
|
| Q |
328 |
aaggcacctcaatacaggattatgtcaacaagtttgataggattataccagacttgaaggatatag |
393 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14091842 |
aaggcacctcaatccgggattatgtcaacaagtttgataggattatatcagacttgaaggatatag |
14091777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 6311708 - 6311765
Alignment:
| Q |
34 |
atttttcctattgaaggatgcagatgaaaaatatacttatttcacaaaagttgcacaa |
91 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
6311708 |
atttttcctattggaggatgcaaatgaaaaatttgcttatttcacaaaagttacacaa |
6311765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 46454318 - 46454709
Alignment:
| Q |
1 |
atatgaaatcggaaaattcaatggaacaaaatgatttttcctattgaaggatgcagatgaaaaatatacttatttcacaaaagttgcacaagacattagc |
100 |
Q |
| |
|
||||||||| | ||| |||||||||| ||||||||||||||||||| |||||| ||||||||||| | ||||| |||||||||||||| ||| | |||| |
|
|
| T |
46454318 |
atatgaaatagaaaagttcaatggaa-aaaatgatttttcctattggaggatgaagatgaaaaatctgcttatatcacaaaagttgcataaggcgttagt |
46454416 |
T |
|
| Q |
101 |
ggaaaaagaacaaaaacctatgagtatgaagaatgaggattgggatggattagatctcaaagcacgagccgccataatctcatgccttgagatagatgtt |
200 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| ||||||||||||| | |||||||| ||||||| || |||||||||| ||||||||| | |||||| |
|
|
| T |
46454417 |
gggaaaagaacaaaaacctgtgagtatgaaggatgaggattgggaagagttagatcttgaagcacgggcagccataatcttatgccttgatagggatgtt |
46454516 |
T |
|
| Q |
201 |
gcattcttggtaaatgaagaagcaacaacatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctacttgaaat |
300 |
Q |
| |
|
||||||||||| |||||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||| |||||| | ||||| ||||||| |
|
|
| T |
46454517 |
gcattcttggttaatgaagaagcaacggatgctggcgtatggtcaaagttagagaaaactttcatgacgaaaactctgacaaatcggatctatttgaaat |
46454616 |
T |
|
| Q |
301 |
ccaaattgtatacatgcaagatggaggaaggcacctcaatacaggattatgtcaacaagtttgataggattataccagacttgaaggatatag |
393 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46454617 |
ccaaattgtatacatgtaagatggaggaaggcacctcaatacggaattatgtcaacaagtttgataggattatatcagacttgaaggatatag |
46454709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 28 - 393
Target Start/End: Complemental strand, 24880870 - 24880507
Alignment:
| Q |
28 |
aaaatgatttttcctattgaaggatgcagatgaaaaatatacttatttcacaaaagttgcacaagacattagcggaaaaagaacaaaaacctatgagtat |
127 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||| | |||| || ||||||||||||||| ||||||| |
|
|
| T |
24880870 |
aaaatgatttttcctattggaggatgcaaatgaaaaatctgcttatatcacaaaagttgcataaggcgttagtggggaaagaacaaaaacctgtgagtat |
24880771 |
T |
|
| Q |
128 |
gaagaatgaggattgggatggattagatctcaaagcacgagccgccataatctcatgccttgagatagatgttgcattcttggtaaatgaagaagcaaca |
227 |
Q |
| |
|
|||| ||||||||||||| | |||||||| ||||||| || |||||||||| || |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
24880770 |
gaaggatgaggattgggaagagttagatcttgaagcacgggcagccataatcttataccttgagagggatgttgcattcttggttaatgaagaagcaacg |
24880671 |
T |
|
| Q |
228 |
acatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctacttgaaatccaaattgtatacatgcaagatggagg |
327 |
Q |
| |
|
| |||| || | ||||||||||||||||| |||||||| ||||||||| |||||| | |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
24880670 |
gctgctggcgtatagtcaaagttagagaaaactttcatgacgaaaactctgacaaatcggatctacatgaaatccaa--tgtatacatgcaagatggagg |
24880573 |
T |
|
| Q |
328 |
aaggcacctcaatacaggattatgtcaacaagtttgataggattataccagacttgaaggatatag |
393 |
Q |
| |
|
||||||||||||| | ||||||| ||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
24880572 |
aaggcacctcaatccgggattatttcaacaaatttgataggattatatcagacttgaaggatatag |
24880507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 392
Target Start/End: Original strand, 7761112 - 7761264
Alignment:
| Q |
240 |
tggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctacttgaaatccaaattgtatacatgcaagatggaggaaggcacctcaa |
339 |
Q |
| |
|
|||||||||||||| || | |||||||| |||||||||||||||| |||| ||||| |||| |||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
7761112 |
tggtcaaagttagaaaatattttcatgacgaaaactctaacaaatcgaatttacttaaaattcaaattgtatacattcaaaatgaaggaaggcacctcaa |
7761211 |
T |
|
| Q |
340 |
tacaggattatgtcaacaagtttgataggattataccagacttgaaggatata |
392 |
Q |
| |
|
| | | |||||||| || ||||||||||| ||| || |||| ||||||||| |
|
|
| T |
7761212 |
tccgaaaatatgtcaataaatttgataggataatatcaaacttaaaggatata |
7761264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 7761427 - 7761314
Alignment:
| Q |
199 |
ttgcattcttggtaaatgaagaagcaacaacatctggggtgtggtcaaagttagagaaaaatttcatgatgaaaactctaacaaattgaatctacttgaa |
298 |
Q |
| |
|
||||||||||||| || ||||||||||| ||| ||||| ||||||| ||||| |||||||||| |||| | |||||||| |||||||||||| |
|
|
| T |
7761427 |
ttgcattcttggttaacgaagaagcaaccgttgttggcgtgtgctcaaagtaggagaataatttcatgacaaaaattataacaaatagaatctacttgag |
7761328 |
T |
|
| Q |
299 |
atccaaattgtata |
312 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7761327 |
atccaaattgtata |
7761314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University