View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9772_low_21 (Length: 406)

Name: NF9772_low_21
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9772_low_21
NF9772_low_21
[»] chr1 (6 HSPs)
chr1 (1-388)||(32359360-32359748)
chr1 (1-68)||(21516467-21516534)
chr1 (1-78)||(42747735-42747812)
chr1 (1-61)||(15801328-15801388)
chr1 (1-35)||(3161030-3161064)
chr1 (5-79)||(31117546-31117620)
[»] chr2 (4 HSPs)
chr2 (1-45)||(15804513-15804557)
chr2 (1-77)||(40910098-40910174)
chr2 (1-77)||(44984145-44984221)
chr2 (1-45)||(5946410-5946454)
[»] chr5 (3 HSPs)
chr5 (1-68)||(34640220-34640287)
chr5 (1-35)||(31812171-31812205)
chr5 (1-37)||(6462238-6462274)
[»] chr7 (3 HSPs)
chr7 (3-44)||(42967964-42968005)
chr7 (1-36)||(2525330-2525365)
chr7 (1-61)||(7379593-7379653)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-35)||(166780-166814)
[»] chr4 (3 HSPs)
chr4 (1-42)||(2103182-2103223)
chr4 (1-42)||(30070335-30070376)
chr4 (1-45)||(1162399-1162443)
[»] chr3 (2 HSPs)
chr3 (1-42)||(35696652-35696693)
chr3 (1-45)||(9780476-9780520)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 32359360 - 32359748
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcatgagctataagcnnnnnnnnnn-gccaaaacta 99  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||           ||||||||||    
T  32359360 ttaccaaacattacaaattcaatcagctagtttatctgctatcagcaataagctactttataagacatgagctataagctttttttttttgccaaaacta 32359459  T
Q  100 acttcttcttttcttacatttccctctcaaattcattgtaattccaaacactagaagacttctacatgattgctcgtatttaatttactattaaaagaaa 199  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32359460 acttcttcttttcttacatttccctctcacattcattgtacttccaaacactagaagacttctacatgattgctcgtatttaatttactactaaaagaaa 32359559  T
Q  200 cctaaatcttaattacatactgannnnnnnnnnnnnnnnngcaaacaatcttattagcattaaataataatcatcatcatcatcgcaagaaaaacaaaca 299  Q
    |||||||| ||||| ||||||||                 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32359560 cctaaatcctaattgcatactgattttttattttatttttgcaaacaatcttattagcataaaataataatcatcatcatcatcgcaagaaaaacaaaca 32359659  T
Q  300 gagtaaatctcaaatagataactaaaattatgaatatttgaaaaatgttcccgattctattaaacatgaatttggtcctacctcaagca 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32359660 gagtaaatctcaaatagataactaaaattatgaatatttgaaaaatgttcccgattctattaaacatgaatttggtcctacctcaagca 32359748  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21516534 - 21516467
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcat 68  Q
    ||||||||||  |||||||||||||||||||||||| |||||||   ||||||||  |||||||||||    
T  21516534 ttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagcttataagtcat 21516467  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42747735 - 42747812
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcatgagctataag 78  Q
    |||||||||| |||||||||||| | ||||||||||  |||||||  |||| |||  ||||||||||| |||||||||    
T  42747735 ttaccaaacactacaaattcaattaactagcttatcctctatcagctataaactagcttataagtcatcagctataag 42747812  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15801328 - 15801388
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttat 61  Q
    |||||||||||| |||||||||||||||| |||||| |||||||   |||||||| |||||    
T  15801328 ttaccaaacattgcaaattcaatcagctaacttatccactatcatctataagctagtttat 15801388  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3161030 - 3161064
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  3161030 ttaccaaacactacaaattcaatcagctagcttat 3161064  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 31117620 - 31117546
Alignment:
Q  5 caaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcatgagctataagc 79  Q
    |||||| |||||||||||||||||||||||| | || |||   ||||||||  ||||||||||| | ||||||||    
T  31117620 caaacactacaaattcaatcagctagcttatttgctctcaactataagctagcttataagtcatcaactataagc 31117546  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15804513 - 15804557
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcag 45  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||    
T  15804513 ttaccaaacattacaaattcaatcagctagtttatccactatcag 15804557  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40910098 - 40910174
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcatgagctataa 77  Q
    |||| ||||| |||||||| |||| ||||||||||| ||||||||  ||||||||  |||||||||||  |||||||    
T  40910098 ttacaaaacactacaaattgaatctgctagcttatccactatcagctataagctaacttataagtcatctgctataa 40910174  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44984221 - 44984145
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcatgagctataa 77  Q
    |||| ||||| |||||||| |||| ||||||||||| ||||||||  ||||||||  |||||||||||  |||||||    
T  44984221 ttacaaaacactacaaattgaatctgctagcttatccactatcagctataagctaacttataagtcatctgctataa 44984145  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5946410 - 5946454
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcag 45  Q
    ||||||||||||| ||||||||||||||| ||||||  |||||||    
T  5946410 ttaccaaacattataaattcaatcagctaccttatccgctatcag 5946454  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34640220 - 34640287
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttataagtcat 68  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||  ||||||||  ||||| |||||    
T  34640220 ttaccaaacattacaaattcaataagctagcttatccgctatcagctataagctagcttataggtcat 34640287  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31812171 - 31812205
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  31812171 ttaccaaacactacaaattcaatcagctagcttat 31812205  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6462274 - 6462238
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatct 37  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  6462274 ttactaaacactacaaattcaatcagctagcttatct 6462238  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 42967964 - 42968005
Alignment:
Q  3 accaaacattacaaattcaatcagctagcttatctactatca 44  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  42967964 accaaacattacaaattcaatcggctagcttatctgctatca 42968005  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2525330 - 2525365
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatc 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  2525330 ttaccaaacaatacaaattcaatcagctagcttatc 2525365  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7379593 - 7379653
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcagaaataagctactttat 61  Q
    |||||||||||| |||| ||||||||||| |||||| |||||||   |||||||| |||||    
T  7379593 ttaccaaacattgcaaactcaatcagctaacttatccactatcatctataagctagtttat 7379653  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 166780 - 166814
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  166780 ttaccaaacactacaaattcaatcagctagcttat 166814  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2103223 - 2103182
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactat 42  Q
    |||||||||| |||||||||||| ||||||||||||| ||||    
T  2103223 ttaccaaacactacaaattcaataagctagcttatctgctat 2103182  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30070335 - 30070376
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactat 42  Q
    |||||||||| |||||||||||| |||||||||||| |||||    
T  30070335 ttaccaaacactacaaattcaattagctagcttatccactat 30070376  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1162399 - 1162443
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcag 45  Q
    |||||||| ||||||||||||||||||||| |||||  |||||||    
T  1162399 ttaccaaatattacaaattcaatcagctagattatccgctatcag 1162443  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35696652 - 35696693
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactat 42  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  35696652 ttaccaaacactacaaattcaatctgctagcttatccactat 35696693  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9780520 - 9780476
Alignment:
Q  1 ttaccaaacattacaaattcaatcagctagcttatctactatcag 45  Q
    |||||||||||||||||| ||||||| || |||||| ||||||||    
T  9780520 ttaccaaacattacaaatccaatcagttaacttatcaactatcag 9780476  T

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