View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_23 (Length: 402)
Name: NF9772_low_23
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 44310094 - 44310476
Alignment:
| Q |
3 |
tgttcagctataggaaacctataacatcaaagcatggcaatcaaaattcaatctattattaataaactaaaagtttatattttgtgtaggaatatgatac |
102 |
Q |
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| T |
44310094 |
tgttcagctataggaaacctataacatcaaagcatggcaatcaaaattcaatctattattaataaactaaaagtttatattttgtgtaggaatatgatac |
44310193 |
T |
|
| Q |
103 |
ttggacttgaattggtagatttctgagtggggtannnnnnnn-cctccataagatgtctgaattgcgagaagaagcaacaaacatcaccttggtaggaaa |
201 |
Q |
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| T |
44310194 |
ttggacttgaattggtcgatttctgagtggggtatttttttttcctccataagatgtctgaattgcgagaagaagcaacaaacatcaccttggtaggaaa |
44310293 |
T |
|
| Q |
202 |
atatccaaccttgtcttgaaactcggttaacttgcttccattatttatttatttattttgactaagagaagtagaattcttcataaacatggttgcataa |
301 |
Q |
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| T |
44310294 |
atatccaaccttgtcttgaaactcggttaacttgcttccatt---tatttatttattttgactaagagaagtagaattcttcataaacatggttgcataa |
44310390 |
T |
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| Q |
302 |
tctatcaatgtggagactattgtcgaactccatgagaaaaagttgacgaaagtcatcttataaacttgaagctgacacacatatct |
387 |
Q |
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| T |
44310391 |
tctatcaatatggagactattgtcgaactccatgaaaaaaagttgacgaaagtcatcttataaacttgaagctgacacacatatct |
44310476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 385
Target Start/End: Original strand, 22037022 - 22037138
Alignment:
| Q |
270 |
aagtagaattcttcataaacatggttgcataatctatcaatgtggagactattgtcgaactccat-gagaaaaagttgacgaaagtcatcttataaactt |
368 |
Q |
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|||||||| ||||| |||| |||| ||||||||||||||||| |||||||||||||||| | |||||| |||||| |||||||| |||||||||| |
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| T |
22037022 |
aagtagaactcttcctaaaattggtcacataatctatcaatgtgaagactattgtcgaactgtgtccagaaaatgttgaccaaagtcatattataaactt |
22037121 |
T |
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| Q |
369 |
gaagctgacacacatat |
385 |
Q |
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|||| ||||||||||| |
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| T |
22037122 |
gaagaagacacacatat |
22037138 |
T |
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