View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_24 (Length: 395)
Name: NF9772_low_24
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 217 - 385
Target Start/End: Original strand, 4163189 - 4163358
Alignment:
| Q |
217 |
tatgcacaacatgttccccttacttgcatataaaagactgaattccaaaaaattattcacatatcacatttttatctctatacttttgcagcattgaag- |
315 |
Q |
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| T |
4163189 |
tatgcacaacatgttccccttacttgcatataaaagactgaattccaaaaaattattcacatatcacatttttatctctatacttttgcagcattgaaga |
4163288 |
T |
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| Q |
316 |
nnnnnnntgggttctccaaaattaccaatcactatagtaataccattaattcttttattttttacctatg |
385 |
Q |
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| T |
4163289 |
aaaaaaatgggttctccaaaattaccgatcactatagtaataccattaattcttttattttttacctatg |
4163358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 4162932 - 4163058
Alignment:
| Q |
5 |
gactcaacaacaagaagaaaatatagaaattttttggctaacataaacaaaaaaccaacacaaagcgtcaaagtgtgtctaacgtcagtaacttaaggat |
104 |
Q |
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| T |
4162932 |
gactcaacaacaagaagaaaatatagaaaatttttggctaacataaacaaaaaaccaacacaaagcgtcaaagtgtgtctaatgtcagtaacttaaggat |
4163031 |
T |
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| Q |
105 |
caaaatgagaataacttaagaaattaa |
131 |
Q |
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| T |
4163032 |
caaaatgagaacaacttaagaaattaa |
4163058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 4163132 - 4163199
Alignment:
| Q |
129 |
taatttagggaccgaaattgtaatttacgatttataattaataaaaaagctatagggtatgcacaaca |
196 |
Q |
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| T |
4163132 |
taatttagggaccaaaattgtaatttacgatttataattaataaaaaagctataggatatgcacaaca |
4163199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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