View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_3 (Length: 547)
Name: NF9772_low_3
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Complemental strand, 53666638 - 53666112
Alignment:
| Q |
17 |
tatatacatttcttatatctcacaatccaaaacatctcaaatacgttacgaattataaaatttgaactgaaataaaatacttg--------------cga |
102 |
Q |
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| T |
53666638 |
tatatacatttcttatatctcacaatccaaaacatctcaaatatgttacgaattataaaatctgaactgaaataaaataagtattttaaaggatacacga |
53666539 |
T |
|
| Q |
103 |
gaaacatgtagggtagaaaagaagttcacaaaataattagtctctcgaacctataaatgacgctttaaattagacaacaaatttgtgaaagtaatttgat |
202 |
Q |
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| T |
53666538 |
gaaacatgtagggtggaaaagaagttcacaaaataattagtctctcgaacctataaatgacgctttaaattagacaacaaatttgtgaaagtaatttgat |
53666439 |
T |
|
| Q |
203 |
atctaatattcacacccctcacgaatagaaatggcacgttattataaacttttgttctttcacactctgtatagcttcaatgttttaaaagtataannnn |
302 |
Q |
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| T |
53666438 |
atctaatattcacacccctcacgaatagaaatggcacgttattataaacttttgttctttcacactctgtatagcttcaatgttttaaaagtataatttt |
53666339 |
T |
|
| Q |
303 |
nnnataaatacattctctagtctaacataccaaccgaatggtaagagtgtgactttgtaattttaagagcttcaatannnnnnnngtcaaaaaagaaaga |
402 |
Q |
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| T |
53666338 |
tttataaatacattctctagtctaacataccaaccgaatggtaagagtatgattttgtaattttaagagcgtcaata-tttttttgtcaaaaaagaaaga |
53666240 |
T |
|
| Q |
403 |
gcttcaatatttcaaaagtaannnnnnnnnnaataaatatgttctctagtctaaaatattaattgaacggtaagagttagactttgtaattttaagagat |
502 |
Q |
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| T |
53666239 |
gcttcaatatttcaaaagtaatttttttttt-ataaatatgttctctagtctaaaatattaattgaacggtaagagttagactttgtaattttaagagat |
53666141 |
T |
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| Q |
503 |
atggttacaattcatctaaagtgataatt |
531 |
Q |
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| T |
53666140 |
atggttacaattcatctaaagtaataatt |
53666112 |
T |
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