View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_30 (Length: 373)
Name: NF9772_low_30
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 44167214 - 44167556
Alignment:
| Q |
18 |
tgaaaagcttgtctgaatgaactacaatggatttcacagcaccatttccagatactattgtgttagtgttaattgattgttgagggtgagaatgaacatg |
117 |
Q |
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| T |
44167214 |
tgaaaagcttgtctgaatgaactacaatggatttcacagcaccatttccagatactattgtgttagtgttaattgattgttgagggtgagaatgaacatg |
44167313 |
T |
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| Q |
118 |
agaaaggttccatgatatgacttctgtgttggatgaaccagtgtagagaaattttccaacaagtgttaaagaggatatgtaagtgtggaatttcagagtt |
217 |
Q |
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| T |
44167314 |
agaaaggttccatgatgtgacttctgtgttggatgaaccagtgtagagaaattttccgacaagtgttaaagaggatatgtaagtgtggaatttcagagtt |
44167413 |
T |
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| Q |
218 |
gtgaggcatgtgaaggaagaattatgaaattgttgtgagtttgagttgagtgatggaactgatgcgaggctgtgttgtgaagaaagagtacgtgtggtag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44167414 |
gtgaggcatgtgaaggaagaattatgaaattgttgtgagtttgagttgagtgaaggaattgatgcgaggctgtgttgtgaagaaagagtacgtgtggtag |
44167513 |
T |
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| Q |
318 |
ttaacnnnnnnnggaagttattagagtcgttgctgaaggatct |
360 |
Q |
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| T |
44167514 |
ttaactttttttggaagttattagagtcgttgctgaaggatct |
44167556 |
T |
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