View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9772_low_33 (Length: 360)
Name: NF9772_low_33
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_33 |
 | |
|
| [»] scaffold0161 (2 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 17707194 - 17707052
Alignment:
| Q |
205 |
aatttattctaactgcaacctctcacccacttctcattgaaatttaatgcaatctttaatttcgaaatggtggttgtatagttctaactacatgcccggg |
304 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
17707194 |
aatttattctcactgcaacctctcacccacttctcattgaaatttaatgcaacttttaatttcgaaatggtggttgtataggtcttactacatgccccgg |
17707095 |
T |
|
| Q |
305 |
tgtatgaggtccacctttaggttatgttttcattacaactcct |
347 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
17707094 |
tgtatgaggtccacctttaggttaagttttcattacagctcct |
17707052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 16659916 - 16660041
Alignment:
| Q |
222 |
acctctcacccacttctcattgaaatttaatgcaatctttaatttcgaaatggtggttgtatagttctaactacatgcccgggtgtatgaggtccacctt |
321 |
Q |
| |
|
|||||||||||||||| | |||||| || |||||| ||||||||| |||||||||||||||||| ||| | || | |||| ||||||||| ||||||||| |
|
|
| T |
16659916 |
acctctcacccacttcactttgaaagttgatgcaacctttaattttgaaatggtggttgtataggtcttaatagaggccccggtgtatgaagtccacctt |
16660015 |
T |
|
| Q |
322 |
taggttatgttttcattacaactcct |
347 |
Q |
| |
|
|||||| |||||||| ||| ||||| |
|
|
| T |
16660016 |
aaggttaagttttcataacagctcct |
16660041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 16661897 - 16661817
Alignment:
| Q |
205 |
aatttattctaactgcaacctctcacccacttctcattgaaatttaatgcaatctttaatttcgaaatggtggttgtatag |
285 |
Q |
| |
|
|||||||||| || |||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
16661897 |
aatttattctcacgacaacctctcacccaattcccattgaaatttaaaacaacctttaatttcgaaatggtggttgtatag |
16661817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 15107573 - 15107446
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
|||| ||||||||||| ||||| |||| ||||||| ||| || ||| || |||||||||| |||||||||| ||||||| |||||||||||| ||| | |
|
|
| T |
15107573 |
cattattgttgatgcagactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcattctcaattgtcacttagtttgattgtttc--tgagt |
15107476 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatag |
144 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |
|
|
| T |
15107475 |
ttaaatgtaactctacgattaataatatag |
15107446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 19403534 - 19403657
Alignment:
| Q |
17 |
atttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactt |
115 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||| ||| || ||| || |||||||| | || ||||||| ||||||| |||||||||||| ||| || |
|
|
| T |
19403534 |
atttttgttgatgctaactaaatgttgttaatttgcttctttgagattgtgcatgtcaatcactctcaattgtcacttagtttgattgtttc--tgagtt |
19403631 |
T |
|
| Q |
116 |
taaatttaactctaaaattaataata |
141 |
Q |
| |
|
||||| |||||||| ||||||||||| |
|
|
| T |
19403632 |
taaatgtaactctacaattaataata |
19403657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 16866489 - 16866414
Alignment:
| Q |
258 |
ctttaatttcgaaatggtggttgtatagttctaactacatgcccgggtgtatgaggtccacctttaggttatgttt |
333 |
Q |
| |
|
||||||||| |||||||||||||||| ||| | || | |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
16866489 |
ctttaattttcaaatggtggttgtataagtcttaatagaggccccggtgtatgaggtccacctttagggtatgttt |
16866414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 33813237 - 33813075
Alignment:
| Q |
16 |
catttttgttgatgcaaactaatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactt |
115 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
33813237 |
catttttgttgatacaaactaatatttttaatttattttgttgagattttgcatgtcgaccattctcaatcattacttagtttgattgtttctatgactt |
33813138 |
T |
|
| Q |
116 |
taaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaa |
178 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||| || ||| || |||||| |
|
|
| T |
33813137 |
taaatgtaactctaaaattaataatatagccactttaatacttacagataaaactctacaaaa |
33813075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 46589748 - 46589621
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||| ||| || ||| || |||||||||| || | ||||| |||||||||||||||||||| ||| | |
|
|
| T |
46589748 |
catttttgttgatgcaaattaaatgttgctaatttgcttctttgagattgtgcatgtcgatcaatttcaattgtcacttaatttgattgtttc--tgagt |
46589651 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatag |
144 |
Q |
| |
|
||||| |||||||| || ||||||||||| |
|
|
| T |
46589650 |
ttaaacgtaactctacaaataataatatag |
46589621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 30694533 - 30694344
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||| ||| || ||| || || ||||||| || | ||||| ||||||| ||||| ||||||| || | |
|
|
| T |
30694533 |
catttttattgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatgtcgatcactttcaattgtcacttactttgaatgtttct--gagt |
30694436 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatagacactttaata-cttacatatgaaattcaacaaaatccatacatcgtacgaattagagtcta |
205 |
Q |
| |
|
|||||| |||||||| || ||||||||||| || ||| ||| ||| |||||||| || |||||| || | ||||| ||| |||||||||| |
|
|
| T |
30694435 |
ttaaatgtaactctacaagtaataatatagccaatttgatattttatatatgaaactctacaaaacccgtgcatcgcacgggttagagtcta |
30694344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 22209591 - 22209733
Alignment:
| Q |
16 |
catttttgttgatgcaaactaatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactt |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
22209591 |
catttttgttgatgcaaactaatatttttaatttgcttttttgagattttgcatgtcgaccactctcaatcatcacttagtttgattgtttttatcactt |
22209690 |
T |
|
| Q |
116 |
taaatttaactctaaaattaataatatagacactttaatactt |
158 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
22209691 |
taaatataactctaaaattaataatatagccactttaacactt |
22209733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 42935794 - 42935962
Alignment:
| Q |
36 |
aatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaatta |
135 |
Q |
| |
|
||||||| |||||| |||||| ||| ||||| |||| | | | |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
42935794 |
aatgtttctaattttcttttttgagattttgtatgttggc-actctcaatcat-acttaatttgattgtgtctatgactttaaatataactctaaaatta |
42935891 |
T |
|
| Q |
136 |
ataatatagacactttaatacttacatatgaaa-ttcaacaaaatccatacatcgtacgaattagagtcta |
205 |
Q |
| |
|
||||||||| || ||| ||||||| |||||||| || | |||| || ||||||||||| |||||||||| |
|
|
| T |
42935892 |
ataatatagtcagtttgatacttatatatgaaactttacaaaaacccgtacatcgtacgggttagagtcta |
42935962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 8191966 - 8191828
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| || ||| || | || |||||||||| |||||||||| ||||||| ||| ||||||| | || | |
|
|
| T |
8191966 |
catttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaattgtcacttagtttaattgttttt--gagt |
8191869 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatagacactttaata |
155 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||||||| |
|
|
| T |
8191868 |
ttaaaagtaactctataaataataatatagtcaatttaata |
8191828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 19878507 - 19878585
Alignment:
| Q |
65 |
tgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatata |
143 |
Q |
| |
|
|||||||||| || |||||||||||||||| |||||| ||||||||| ||| ||| ||||| ||| |||||||||| |
|
|
| T |
19878507 |
tgcatgtcgatcactctcaatcatcacttagtttgataatttctatgagtttgaatgtaactttaagggtaataatata |
19878585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 54421209 - 54421302
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttct |
108 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| ||| ||| || ||| || |||||||||| | ||||||| ||||||| ||||||||||||| |
|
|
| T |
54421209 |
catttttgttgatgtaaactaaatgttgttactttgcttctttgagattgtgcatgtcgataactctcaattgtcacttagtttgattgtttct |
54421302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 44164807 - 44165001
Alignment:
| Q |
16 |
catttttgttgatgcaaactaatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
44164807 |
catttttgttgatgcaaactgatgtttttaatttttttttt-gagattttgcatgtcgaccactctcaatcatcacatagtttgattgtttctatgactt |
44164905 |
T |
|
| Q |
116 |
taaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaatccatacatcgtacgaattagagtctaatttatt |
212 |
Q |
| |
|
||| | ||||||||||||||||||||||| |||||| | | | |||||||||| || |||||| | |||||| |||| |||||||||| |||||| |
|
|
| T |
44164906 |
taagtgtaactctaaaattaataatatagccactttga-aataacatatgaaactctacaaaactcgtacatcatacgggttagagtctagtttatt |
44165001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 17724544 - 17724404
Alignment:
| Q |
62 |
ttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttaca |
161 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||| || ||| ||||||| | |
|
|
| T |
17724544 |
ttttgcatgtctaccactctcaatcatcacttagtttgattgtttctatgactttgaatgtgactctaaaattaataatatagtcagttttatacttata |
17724445 |
T |
|
| Q |
162 |
tatgaaattcaacaaaatccatacatcgtacgaattagagt |
202 |
Q |
| |
|
||||||| || ||| | || |||||||||||| ||||||| |
|
|
| T |
17724444 |
tatgaaactctgcaatacccgtacatcgtacgagttagagt |
17724404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 2792434 - 2792596
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||| |||||| || || || ||||||| || |||||||||||| ||| |||||||||||||| || |
|
|
| T |
2792434 |
catttttattgatgcaagctaaatgtttttaatttgcttttttgatattgtgtatgtcgatcactctcaatcatcatttagtttgattgtttctacgagc |
2792533 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaa |
178 |
Q |
| |
|
|||| | ||||||||||| ||||||||| | |||||||||||||| |||||||| || |||||| |
|
|
| T |
2792534 |
ttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaactctacaaaa |
2792596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 41061432 - 41061369
Alignment:
| Q |
81 |
tcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatag |
144 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
41061432 |
tcaatcatcacttagtttgattatttctatgactttgaatgtaactctaaaattaataatatag |
41061369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 6095958 - 6096149
Alignment:
| Q |
17 |
atttttgttgatgcaaact-aatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactt |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||| ||| ||||||||||| | | |||||||||||||||| ||||||| |||| ||||||| |
|
|
| T |
6095958 |
atttttgttgatgcaaagagaatgtttttaactttcttttttgagattttgcatgtcaat-actctcaatcatcacttagtttgattatttccatgactt |
6096056 |
T |
|
| Q |
116 |
taaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaatccatacatcgtacgaattagagtctaatt |
208 |
Q |
| |
|
| ||| ||||||||||||||||||||||| || ||| ||||||| |||||||| || || |||||| ||||||||| | ||||||||||||| |
|
|
| T |
6096057 |
tgaatgtaactctaaaattaataatatagtcattttcatacttatatatgaaaatctacgaaatccgtacatcgtatgggttagagtctaatt |
6096149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 11502578 - 11502760
Alignment:
| Q |
16 |
catttttgttgatgcaaactaatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactt |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| ||| ||||||| | ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
11502578 |
catttttgttgatgcaaactaatgtttctaatttgcttttttgagattttgca-------ccctctcaatcatcacatagtttgattgtttctatgactt |
11502670 |
T |
|
| Q |
116 |
taaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaatccatacatcgtacgaattagagtcta |
205 |
Q |
| |
|
| ||| ||||||||||||||||||| ||| |||||| ||||||| |||||||| || || ||| || ||||| ||||| |||||||||| |
|
|
| T |
11502671 |
tgaatgtaactctaaaattaataatgtagccactttgatacttatatatgaaactctacgaaacccgtacatagtacgggttagagtcta |
11502760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 41075232 - 41075123
Alignment:
| Q |
79 |
tctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaa |
178 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||||| || ||| ||||||| ||||||||||| |||||| |
|
|
| T |
41075232 |
tctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaagttaataatatagtcagtttgatacttatatatgaaattctacaaaa |
41075133 |
T |
|
| Q |
179 |
tccatacatc |
188 |
Q |
| |
|
||||||||| |
|
|
| T |
41075132 |
cccatacatc |
41075123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 15256209 - 15256088
Alignment:
| Q |
84 |
atcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaatccat |
183 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| | | ||| ||||||||||||||||||| || ||| ||||||| |||||||| || | |||| | | |
|
|
| T |
15256209 |
atcatcacttagtttggttgtttctatgactttgagtgtaattctaaaattaataatatagtcattttgatacttatatatgaaactctataaaactcgt |
15256110 |
T |
|
| Q |
184 |
acatcgtacgaattagagtcta |
205 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
15256109 |
acatcgtacgggttagagtcta |
15256088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 17909745 - 17909862
Alignment:
| Q |
51 |
ctttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactt |
150 |
Q |
| |
|
|||||| |||||| | ||| |||| || ||| |||||||||||| ||| ||||||| ||||| ||| ||| ||||||||||| |||||||| | || || |
|
|
| T |
17909745 |
cttttttgaggttgttcatatcgatcactcttaatcatcacttagtttaattgtttttatgagtttgaatgtaactctaaaagtaataatacaaccaatt |
17909844 |
T |
|
| Q |
151 |
taatacttacatatgaaa |
168 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
17909845 |
taatacttatatatgaaa |
17909862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 8207606 - 8207443
Alignment:
| Q |
36 |
aatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaatta |
135 |
Q |
| |
|
||||||| |||||| |||||| ||| ||||| |||| | | | |||||||||| ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
8207606 |
aatgtttctaattttcttttttgagattttgtatgttggc-actctcaatcat-acttaatttgattgtgtctatgactta-----taactctaaaatta |
8207514 |
T |
|
| Q |
136 |
ataatatagacactttaatacttacatatgaaattcaacaaaatc-catacatcgtacgaattagagtcta |
205 |
Q |
| |
|
|||||||| || ||| ||||||| |||||||| | |||||| | | ||||||||||| |||||||||| |
|
|
| T |
8207513 |
ataatataatcagtttgatacttatatatgaaactttacaaaaactcgtacatcgtacgggttagagtcta |
8207443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 15253434 - 15253337
Alignment:
| Q |
81 |
tcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaa |
178 |
Q |
| |
|
|||||||||| || |||| |||||||||| | ||| ||| ||| ||||||||||||||||| | || ||||||||||| |||||||| || |||||| |
|
|
| T |
15253434 |
tcaatcatcatttcgtttggttgtttctataattttgaatgtaattctaaaattaataatatggtcattttaatacttatatatgaaactctacaaaa |
15253337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 5585996 - 5585834
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||| |||||| ||| ||||| |||| || | |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
5585996 |
catttttgttgatgcaaacaaaatgtttctaattttcttttttgagattttgtatgttgat-actctcaatcatcacttagtttgattgttactatgact |
5585898 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaa |
178 |
Q |
| |
|
|| || ||||||||||||||||||||||| | ||||||||||| |||||||| || |||||| |
|
|
| T |
5585897 |
ttggatgtaactctaaaattaataatatagttagtttaatacttatatatgaaactctacaaaa |
5585834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 11141180 - 11141273
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttct |
108 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| | || || |||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
11141180 |
catttttgttgatgcaaactaaatgttgttaatttacttctatgaaattgtgcatgtcgatcactctcaattgtcacttaatttgattgtttct |
11141273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 10484673 - 10484849
Alignment:
| Q |
16 |
catttttgttgatgcaaact-aatgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||| ||| ||||| |||| ||| | |||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
10484673 |
catttttgttgatgcaaacagaatgtttctaattttcttttttgagattttgtatgttgac-actctcaatcat-atttagtttgattgtttctatgact |
10484770 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaatccatacatcgtacg |
193 |
Q |
| |
|
| ||| ||||| ||||||||||||||||| || ||| ||||||| |||||||| || |||||| || ||||||||||| |
|
|
| T |
10484771 |
tcgaatgtaactataaaattaataatatagtcagtttgatacttatatatgaaactctacaaaacccgtacatcgtacg |
10484849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 19251500 - 19251396
Alignment:
| Q |
39 |
gtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaata |
138 |
Q |
| |
|
|||| |||||| |||||| || |||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
19251500 |
gtttataattttcttttttaagattttgcatgtcgac-actctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaaattaata |
19251402 |
T |
|
| Q |
139 |
atatag |
144 |
Q |
| |
|
||||| |
|
|
| T |
19251401 |
ttatag |
19251396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 25165159 - 25165265
Alignment:
| Q |
86 |
catcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaatccatac |
185 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||| |||||| ||||||||| |||||| | ||| |||| ||||||||||| || |||||| || ||| |
|
|
| T |
25165159 |
catcacttagtttgattgtttctatgattttgaatgtaactccaaaattaat-atatagcaagtttgatacctacatatgaaactctacaaaacccgtac |
25165257 |
T |
|
| Q |
186 |
atcgtacg |
193 |
Q |
| |
|
||| |||| |
|
|
| T |
25165258 |
atcatacg |
25165265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 27024155 - 27024028
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||| ||| || ||| || |||||||||| || | ||||| ||||||| |||||||||| | ||| | |
|
|
| T |
27024155 |
catttttgtttatgcaaactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcactttcaattgtcacttagtttgattgtt--tttgagt |
27024058 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatag |
144 |
Q |
| |
|
|||||| |||||||| | ||||||||||| |
|
|
| T |
27024057 |
ttaaatgtaactctacacgtaataatatag |
27024028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 26940 - 26838
Alignment:
| Q |
79 |
tctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaa |
178 |
Q |
| |
|
||||||||||||| || |||||| |||||||||| ||||||| |||| |||||| |||||||||| || ||||||||||| |||||||| || ||||| |
|
|
| T |
26940 |
tctcaatcatcacctagtttgatcgtttctatgagtttaaatataacactaaaagtaataatataaccaatttaatacttatatatgaaactctgcaaaa |
26841 |
T |
|
| Q |
179 |
tcc |
181 |
Q |
| |
|
||| |
|
|
| T |
26840 |
tcc |
26838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 7861 - 7763
Alignment:
| Q |
81 |
tcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatagacactttaatacttacatatgaaattcaacaaaat |
179 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||||||| |||| |||||| |||||||||| || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
7861 |
tcaatcatcacctaggttgaccgtttctatgagtttaaatataaccctaaaagtaataatataaccaatttaatacttatatatgaaattctacaaaat |
7763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 37381733 - 37381860
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||| || ||| || || || |||| || ||||||| |||||||||||||||||||| ||| | |
|
|
| T |
37381733 |
catttttgttgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatatcgatcactctcaattgtcacttaatttgattgtttc--tgagt |
37381830 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatag |
144 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |
|
|
| T |
37381831 |
ttaaatgtaactctacgattaataatatag |
37381860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 44458 - 44522
Alignment:
| Q |
79 |
tctcaatcatcacttaatttgattgtttctatgactttaaatttaactctaaaattaataatatag |
144 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
44458 |
tctcaatcat-acttaatttgattgtttctataacttttaatgtaactctaaaattaataatatag |
44522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 18541 - 18403
Alignment:
| Q |
16 |
catttttgttgatgcaaactaa-tgtttttaatttactttttcgaggttttgcatgtcgaccattctcaatcatcacttaatttgattgtttctatgact |
114 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| || ||| || | || |||||||||| |||||||||| ||||||| ||| ||||||| | || | |
|
|
| T |
18541 |
catttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaattgtcacttagtttaattgttttt--gagt |
18444 |
T |
|
| Q |
115 |
ttaaatttaactctaaaattaataatatagacactttaata |
155 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||||||| |
|
|
| T |
18443 |
ttaaaagtaactctataaataataatatagtcaatttaata |
18403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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