View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9772_low_35 (Length: 347)
Name: NF9772_low_35
Description: NF9772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9772_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 54099881 - 54099635
Alignment:
| Q |
1 |
atcaaactttacttaaccagactaatagagaatgtgcaggtggaatataattttaatttaaaattgcgtacagaaagatatcnnnnnnntagttaacaca |
100 |
Q |
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| T |
54099881 |
atcaaactttacttaaccagactaatagagaatgtgcaggtggaatataatattaaattaaaattgcgtacagaaagatatcaaaaaaatagttaacaca |
54099782 |
T |
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| Q |
101 |
attctttcattacaacaaacttagccagattaataggaagatgttcattccaaaatatcgtaagaaatcaaaataacgattcatcttagcacaagggaga |
200 |
Q |
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| T |
54099781 |
attctttcattacaataaacttagccagattaataggaagatgttcattccaaaatatcgtaagcaatcaaaataacgattcatcttagcacaa------ |
54099688 |
T |
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| Q |
201 |
agggacaaaccgcgaggagacacgaaggtttagcattcagtattcactccttaa |
254 |
Q |
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| T |
54099687 |
-gggacaaaccgcgagaagccacggaggtttagcattcagtattcactccttaa |
54099635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 54099627 - 54099598
Alignment:
| Q |
284 |
aacacactgacagtaaatttgggcaaactt |
313 |
Q |
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| T |
54099627 |
aacacactgacagtaaatttgggcaaactt |
54099598 |
T |
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